DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
EKENK
Uniprot ID:
Q3V6T2
Source protein:
Girdin
Source gene:
CCDC88A
Class:
DEG_APCC_KENBOX_2
Location:
586:590
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.693
ASA_SCORE:
114.34
COIL:
0.0126
CONS_SCORE:
0.6954
DSS_SCORE:
0.3845
HELIX:
0.988
FCONS_SCORE:
1.0387
RIG_SCORE:
0.747
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L592I
TCGA-AA-3510
COAD
TCGA
EKENK
DEG_APCC_KENBOX_2
0.2778
p.L592I
TCGA-AN-A046
BRCA
TCGA
EKENK
DEG_APCC_KENBOX_2
0.2778
p.L592I
TCGA-CA-6717
COAD
TCGA
EKENK
DEG_APCC_KENBOX_2
0.2778
p.L592I
DO1285
BRCA
ICGC
EKENK
DEG_APCC_KENBOX_2
0.2778
p.L592I
DO7783
COAD
ICGC
EKENK
DEG_APCC_KENBOX_2
0.2778
p.L592I
DO8264
COAD
ICGC
EKENK
DEG_APCC_KENBOX_2
0.2778
p.H593Y
TCGA-AX-A2HC
UCEC
TCGA
EKENK
DEG_APCC_KENBOX_2
0.25
p.H593Y
DO41572
UCEC
ICGC
EKENK
DEG_APCC_KENBOX_2
0.25
p.D584N
TCGA-B5-A1MR
UCEC
TCGA
EKENK
DEG_APCC_KENBOX_2
0.2778
p.D584N
DO223578
CLLE
ICGC
EKENK
DEG_APCC_KENBOX_2
0.2778
p.D584N
DO41758
UCEC
ICGC
EKENK
DEG_APCC_KENBOX_2
0.2778
p.A578E
DO229031
LICA
ICGC
EKENK
DEG_APCC_KENBOX_2
0.1111
p.E588D
DO231702
LINC
ICGC
EKENK
DEG_APCC_KENBOX_2
0.6758
p.K597R
ACH-002065
Sarcoma
CCLE
EKENK
DEG_APCC_KENBOX_2
0.25
Drug responses associated with CCDC88A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of EKENK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P07550
Beta-2 adrenergic receptor
DEG_APCC_KENBOX_2
371:375
EKENK
APC,CDC20,FZR1
0.9351
More...
P17844
Probable ATP-dependent RNA helicase DDX5
DEG_APCC_KENBOX_2
339:343
EKENK
APC,CDC20,FZR1
0.5974
More...
P48681
Nestin
DEG_APCC_KENBOX_2
590:594
EKENK
APC,CDC20,FZR1
0.979
More...
Q3V6T2
Girdin
DEG_APCC_KENBOX_2
586:590
EKENK
APC,CDC20,FZR1
0.693
More...
Q6UB98
Ankyrin repeat domain-containing protein 12
DEG_APCC_KENBOX_2
1632:1636
EKENK
APC,CDC20,FZR1
0.9775
More...
Q96HR8
H/ACA ribonucleoprotein complex non-core subunit NAF1
DEG_APCC_KENBOX_2
163:167
EKENK
APC,CDC20,FZR1
0.962
More...
Q9P219
Protein Daple
DEG_APCC_KENBOX_2
589:593
EKENK
APC,CDC20,FZR1
0.9822
More...
Q53SF7
Cordon-bleu protein-like 1
DEG_APCC_KENBOX_2
234:238
EKENK
APC,CDC20,FZR1
0.9886
More...
Q5T9S5
Coiled-coil domain-containing protein 18
DEG_APCC_KENBOX_2
281:285
EKENK
APC,CDC20,FZR1
0.6092
More...
Q92628
Uncharacterized protein KIAA0232
DEG_APCC_KENBOX_2
254:258
EKENK
APC,CDC20,FZR1
0.9987
More...