DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
EKENL
Uniprot ID:
Q3V6T2
Source protein:
Girdin
Source gene:
CCDC88A
Class:
DEG_APCC_KENBOX_2
Location:
381:385
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5571
ASA_SCORE:
109.32
COIL:
0.0124
CONS_SCORE:
0.7552
DSS_SCORE:
0.4347
HELIX:
0.988
FCONS_SCORE:
1.0757
RIG_SCORE:
0.7507
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R371H
TCGA-A6-6781
COAD
TCGA
EKENL
DEG_APCC_KENBOX_2
0.0556
p.R371H
DO8447
COAD
ICGC
EKENL
DEG_APCC_KENBOX_2
0.0556
p.R371C
TCGA-AP-A0LM
UCEC
TCGA
EKENL
DEG_APCC_KENBOX_2
0.0556
p.R371C
TCGA-FI-A2D5
UCEC
TCGA
EKENL
DEG_APCC_KENBOX_2
0.0556
p.R371C
DO43306
UCEC
ICGC
EKENL
DEG_APCC_KENBOX_2
0.0556
p.R371C
DO41331
UCEC
ICGC
EKENL
DEG_APCC_KENBOX_2
0.0556
p.E383D
TCGA-AX-A05Z
UCEC
TCGA
EKENL
DEG_APCC_KENBOX_2
0.6758
p.E383D
DO40884
UCEC
ICGC
EKENL
DEG_APCC_KENBOX_2
0.6758
p.E379Q
TCGA-C5-A8XK
CESC
TCGA
EKENL
DEG_APCC_KENBOX_2
0.2778
p.E379Q
DO49904
CESC
ICGC
EKENL
DEG_APCC_KENBOX_2
0.2778
p.D393E
TCGA-CC-A8HT
LIHC
TCGA
EKENL
DEG_APCC_KENBOX_2
0.1111
p.D393E
DO52187
LIHC
ICGC
EKENL
DEG_APCC_KENBOX_2
0.1111
p.E379K
TCGA-CV-7243
HNSC
TCGA
EKENL
DEG_APCC_KENBOX_2
0.2778
p.E379K
DO15382
HNSC
ICGC
EKENL
DEG_APCC_KENBOX_2
0.2778
p.S374F
TCGA-DU-6392
LGG
TCGA
EKENL
DEG_APCC_KENBOX_2
0.1389
p.S374F
DO22237
LGG
ICGC
EKENL
DEG_APCC_KENBOX_2
0.1389
p.S374Y
TCGA-KQ-A41N
BLCA
TCGA
EKENL
DEG_APCC_KENBOX_2
0.1389
p.S374Y
DO223588
BLCA
ICGC
EKENL
DEG_APCC_KENBOX_2
0.1389
p.D393V
TCGA-XF-AAMX
BLCA
TCGA
EKENL
DEG_APCC_KENBOX_2
0.1111
p.D393V
DO51939
BLCA
ICGC
EKENL
DEG_APCC_KENBOX_2
0.1111
p.N384K
DO228976
LICA
ICGC
EKENL
DEG_APCC_KENBOX_2
0.6918
Drug responses associated with CCDC88A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of EKENL
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A0AVK6
Transcription factor E2F8
DEG_APCC_KENBOX_2
4:8
EKENL
APC,CDC20,FZR1
0.7413
More...
P52179
Myomesin-1
DEG_APCC_KENBOX_2
128:132
EKENL
APC,CDC20,FZR1
0.9051
More...
Q3V6T2
Girdin
DEG_APCC_KENBOX_2
381:385
EKENL
APC,CDC20,FZR1
0.5571
More...
Q5VZM2
Ras-related GTP-binding protein B
DEG_APCC_KENBOX_2
11:15
EKENL
APC,CDC20,FZR1
0.8752
More...
Q71F23
Centromere protein U
DEG_APCC_KENBOX_2
196:200
EKENL
APC,CDC20,FZR1
0.9329
More...
Q8NEM0
Microcephalin
DEG_APCC_KENBOX_2
598:602
EKENL
APC,CDC20,FZR1
0.971
More...
Q9H0I2
Enkurin domain-containing protein 1
DEG_APCC_KENBOX_2
101:105
EKENL
APC,CDC20,FZR1
0.9868
More...
Q9UBT2
SUMO-activating enzyme subunit 2
DEG_APCC_KENBOX_2
616:620
EKENL
APC,CDC20,FZR1
0.9466
More...
Q9ULW0
Targeting protein for Xklp2
DEG_APCC_KENBOX_2
86:90
EKENL
APC,CDC20,FZR1
0.9952
More...
A6NNH2
Protein FAM90A27P
DEG_APCC_KENBOX_2
77:81
EKENL
APC,CDC20,FZR1
0.9811
More...