DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PGSTT
Uniprot ID:
Q13263
Source protein:
Transcription intermediary factor 1-beta
Source gene:
TRIM28
Class:
DEG_SPOP_SBC_1
Location:
510:514
E3 ligase:
SPOP
DEGRON score:
0.9961
ASA_SCORE:
70.62
COIL:
0.9042
CONS_SCORE:
0.2566
DSS_SCORE:
0.3121
HELIX:
0.0372
FCONS_SCORE:
0.8837
RIG_SCORE:
0.7306
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V508D
TCGA-2X-A9D6
TGCT
TCGA
PGSTT
DEG_SPOP_SBC_1
0.2778
p.V508L
TCGA-73-4662
LUAD
TCGA
PGSTT
DEG_SPOP_SBC_1
0.2778
p.V508L
DO24790
LUAD
ICGC
PGSTT
DEG_SPOP_SBC_1
0.2778
p.E501K
DO457
BLCA
ICGC
PGSTT
DEG_SPOP_SBC_1
0.5278
p.R524C
DO230346
COCA
ICGC
PGSTT
DEG_SPOP_SBC_1
0.0556
p.T517S
DO228787
GACA
ICGC
PGSTT
DEG_SPOP_SBC_1
0.6944
p.P503A
DO27349
LUSC
ICGC
PGSTT
DEG_SPOP_SBC_1
0.1389
p.D516E
DO38663
STAD
ICGC
PGSTT
DEG_SPOP_SBC_1
0.2778
p.S516G
DO41871
UCEC
ICGC
PGSTT
DEG_SPOP_SBC_1
0.2778
p.E501D
DO42673
UCEC
ICGC
PGSTT
DEG_SPOP_SBC_1
0.5278
p.V505I
SIDM00889
Cervical Carcinoma
GDSC
PGSTT
DEG_SPOP_SBC_1
0.1944
p.V505I
ACH-001333
Cervical Cancer
CCLE
PGSTT
DEG_SPOP_SBC_1
0.1944
p.V505I
C-33-A
cervix
COSMIC
PGSTT
DEG_SPOP_SBC_1
0.1944
p.T514N
SIDM00282
Colorectal Carcinoma
GDSC
PGSTT
DEG_SPOP_SBC_1
0.8166
p.T514N
ACH-000998
Colon/Colorectal Cancer
CCLE
PGSTT
DEG_SPOP_SBC_1
0.8166
p.T514N
CW-2
large_intestine
COSMIC
PGSTT
DEG_SPOP_SBC_1
0.8166
p.Q502H
SIDM01051
Ovarian Carcinoma
GDSC
PGSTT
DEG_SPOP_SBC_1
0.1111
p.Q502H
ACH-000936
Ovarian Cancer
CCLE
PGSTT
DEG_SPOP_SBC_1
0.1111
p.Q502H
EFO-27
ovary
COSMIC
PGSTT
DEG_SPOP_SBC_1
0.1111
p.E515K
SIDM00217
Colorectal Carcinoma
GDSC
PGSTT
DEG_SPOP_SBC_1
0.3056
p.E515K
ACH-000999
Colon/Colorectal Cancer
CCLE
PGSTT
DEG_SPOP_SBC_1
0.3056
p.E515K
SNU-1040
large_intestine
COSMIC
PGSTT
DEG_SPOP_SBC_1
0.3056
p.S519L
MDA-MB-415
breast
COSMIC
PGSTT
DEG_SPOP_SBC_1
0.1944
p.S516N
DU-145
prostate
COSMIC
PGSTT
DEG_SPOP_SBC_1
0.2778
Drug responses associated with TRIM28 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PGSTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P35452
Homeobox protein Hox-D12
DEG_SPOP_SBC_1
147:151
PGSTT
SPOP
0.9966
More...
Q13263
Transcription intermediary factor 1-beta
DEG_SPOP_SBC_1
510:514
PGSTT
SPOP
0.9961
More...
Q5T011
KICSTOR complex protein SZT2
DEG_SPOP_SBC_1
537:541
PGSTT
SPOP
0.9681
More...
Q7Z5P9
Mucin-19
DEG_SPOP_SBC_1
6153:6157
PGSTT
SPOP
0.988
More...
Q99814
Endothelial PAS domain-containing protein 1
DEG_SPOP_SBC_1
465:469
PGSTT
SPOP
0.9562
More...
Q9H5V8
CUB domain-containing protein 1
DEG_SPOP_SBC_1
286:290
PGSTT
SPOP
0.9952
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
268:272
PGSTT
SPOP
0.9801
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
624:628
PGSTT
SPOP
0.9451
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
680:684
PGSTT
SPOP
0.8958
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
708:712
PGSTT
SPOP
0.5911
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
954:958
PGSTT
SPOP
0.8891
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
1066:1070
PGSTT
SPOP
0.9881
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
1232:1236
PGSTT
SPOP
0.8431
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
1512:1516
PGSTT
SPOP
0.9131
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
1679:1683
PGSTT
SPOP
0.8675
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
1735:1739
PGSTT
SPOP
0.8894
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
1763:1767
PGSTT
SPOP
0.765
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
2037:2041
PGSTT
SPOP
0.8859
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
2149:2153
PGSTT
SPOP
0.9256
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
2315:2319
PGSTT
SPOP
0.8431
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
2623:2627
PGSTT
SPOP
0.8231
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
2789:2793
PGSTT
SPOP
0.9047
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
3069:3073
PGSTT
SPOP
0.8831
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
3236:3240
PGSTT
SPOP
0.9504
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
3292:3296
PGSTT
SPOP
0.8894
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
3594:3598
PGSTT
SPOP
0.8534
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
3706:3710
PGSTT
SPOP
0.9783
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
3872:3876
PGSTT
SPOP
0.9192
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
4152:4156
PGSTT
SPOP
0.876
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
4319:4323
PGSTT
SPOP
0.9707
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
4403:4407
PGSTT
SPOP
0.765
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
4677:4681
PGSTT
SPOP
0.8675
More...
Q9ULH0
Kinase D-interacting substrate of 220 kDa
DEG_SPOP_SBC_1
1401:1405
PGSTT
SPOP
0.9945
More...
Q9UPQ9
Trinucleotide repeat-containing gene 6B protein
DEG_SPOP_SBC_1
232:236
PGSTT
SPOP
0.9955
More...