DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPMY
Uniprot ID:
Q86WA8
Source protein:
Lon protease homolog 2, peroxisomal
Source gene:
LONP2
Class:
ITCH
Location:
640:643
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.768
ASA_SCORE:
63.4
COIL:
0.8975
CONS_SCORE:
0.5265
DSS_SCORE:
0.2285
HELIX:
0.0315
FCONS_SCORE:
1.235
RIG_SCORE:
0.7714
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V647A
TCGA-BS-A0UF
UCEC
TCGA
PPMY
ITCH
0.2222
p.V647A
DO41488
UCEC
ICGC
PPMY
ITCH
0.2222
p.L638I
TCGA-CA-6718
COAD
TCGA
PPMY
ITCH
0.2778
p.R650H
TCGA-CM-6162
COAD
TCGA
PPMY
ITCH
0.1389
p.R650H
DO8479
COAD
ICGC
PPMY
ITCH
0.1389
p.E644D
TCGA-DD-AACQ
LIHC
TCGA
PPMY
ITCH
0.3056
p.E644D
DO52211
LIHC
ICGC
PPMY
ITCH
0.3056
p.E646V
TCGA-L7-A6VZ
ESCA
TCGA
PPMY
ITCH
0.25
p.E644K
SIDM00240
Cervical Carcinoma
GDSC
PPMY
ITCH
0.3056
p.E644K
ACH-002180
Cervical Cancer
CCLE
PPMY
ITCH
0.3056
p.E644K
OMC-1
cervix
COSMIC
PPMY
ITCH
0.3056
p.R650C
ACH-000574
Ovarian Cancer
CCLE
PPMY
ITCH
0.1389
p.R650C
FU-OV-1
ovary
COSMIC
PPMY
ITCH
0.1389
Drug responses associated with LONP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPMY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13521
Secretogranin-2
ITCH
167:170
PPMY
ITCH,NEDD4
0.519
More...
Q01954
Zinc finger protein basonuclin-1
ITCH
74:77
PPMY
ITCH,NEDD4
0.8829
More...
Q86VH2
Kinesin-like protein KIF27
ITCH
608:611
PPMY
ITCH,NEDD4
0.6139
More...
Q86WA8
Lon protease homolog 2, peroxisomal
ITCH
640:643
PPMY
ITCH,NEDD4
0.768
More...
Q96LT9
RNA-binding region-containing protein 3
ITCH
206:209
PPMY
ITCH,NEDD4
0.9928
More...
Q9HBD1
Roquin-2
ITCH
703:706
PPMY
ITCH,NEDD4
0.9939
More...
Q9HCF6
Transient receptor potential cation channel subfamily M member 3
ITCH
1515:1518
PPMY
ITCH,NEDD4
0.8817
More...
Q9NRJ4
Tubby-related protein 4
ITCH
1241:1244
PPMY
ITCH,NEDD4
0.769
More...
O15255
CAAX box protein 1
ITCH
94:97
PPMY
ITCH,NEDD4
0.956
More...
Q8NA69
Testis-expressed protein 45
ITCH
496:499
PPMY
ITCH,NEDD4
0.9984
More...
Q9P281
BAH and coiled-coil domain-containing protein 1
ITCH
901:904
PPMY
ITCH,NEDD4
0.9559
More...