DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPMY
Uniprot ID:
Q9NRJ4
Source protein:
Tubby-related protein 4
Source gene:
TULP4
Class:
ITCH
Location:
1241:1244
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.769
ASA_SCORE:
87.9
COIL:
0.942
CONS_SCORE:
0.4623
DSS_SCORE:
0.2267
HELIX:
0.0168
FCONS_SCORE:
1.0808
RIG_SCORE:
0.7118
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T1239S
TCGA-12-3651
GBM
TCGA
PPMY
ITCH
0.2778
p.T1239S
DO13845
GBM
ICGC
PPMY
ITCH
0.2778
p.C1250Y
TCGA-55-8089
LUAD
TCGA
PPMY
ITCH
0.1667
p.C1250Y
DO23690
LUAD
ICGC
PPMY
ITCH
0.1667
p.S1251C
TCGA-77-7141
LUSC
TCGA
PPMY
ITCH
0.1389
p.S1251C
DO26450
LUSC
ICGC
PPMY
ITCH
0.1389
p.S1234I
TCGA-AP-A051
UCEC
TCGA
PPMY
ITCH
0.1389
p.S1234I
DO42673
UCEC
ICGC
PPMY
ITCH
0.1389
p.S1236F
TCGA-CV-7089
HNSC
TCGA
PPMY
ITCH
0.1944
p.S1236F
DO15158
HNSC
ICGC
PPMY
ITCH
0.1944
p.P1242S
DO222441
ESCA
ICGC
PPMY
ITCH
0.6752
Drug responses associated with TULP4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPMY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13521
Secretogranin-2
ITCH
167:170
PPMY
ITCH,NEDD4
0.519
More...
Q01954
Zinc finger protein basonuclin-1
ITCH
74:77
PPMY
ITCH,NEDD4
0.8829
More...
Q86VH2
Kinesin-like protein KIF27
ITCH
608:611
PPMY
ITCH,NEDD4
0.6139
More...
Q86WA8
Lon protease homolog 2, peroxisomal
ITCH
640:643
PPMY
ITCH,NEDD4
0.768
More...
Q96LT9
RNA-binding region-containing protein 3
ITCH
206:209
PPMY
ITCH,NEDD4
0.9928
More...
Q9HBD1
Roquin-2
ITCH
703:706
PPMY
ITCH,NEDD4
0.9939
More...
Q9HCF6
Transient receptor potential cation channel subfamily M member 3
ITCH
1515:1518
PPMY
ITCH,NEDD4
0.8817
More...
Q9NRJ4
Tubby-related protein 4
ITCH
1241:1244
PPMY
ITCH,NEDD4
0.769
More...
O15255
CAAX box protein 1
ITCH
94:97
PPMY
ITCH,NEDD4
0.956
More...
Q8NA69
Testis-expressed protein 45
ITCH
496:499
PPMY
ITCH,NEDD4
0.9984
More...
Q9P281
BAH and coiled-coil domain-containing protein 1
ITCH
901:904
PPMY
ITCH,NEDD4
0.9559
More...