DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPMY
Uniprot ID:
Q9HCF6
Source protein:
Transient receptor potential cation channel subfamily M member 3
Source gene:
TRPM3
Class:
ITCH
Location:
1515:1518
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.8817
ASA_SCORE:
72.55
COIL:
0.8493
CONS_SCORE:
0.331
DSS_SCORE:
0.5442
HELIX:
0.1195
FCONS_SCORE:
1.1142
RIG_SCORE:
0.691
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1526F
TCGA-BS-A0UV
UCEC
TCGA
PPMY
ITCH
0.1111
p.S1520P
TCGA-EI-6917
READ
TCGA
PPMY
ITCH
0.2778
p.L1505I
TCGA-IQ-A61J
HNSC
TCGA
PPMY
ITCH
0.0556
p.Y1510C
DO48566
BLCA
ICGC
PPMY
ITCH
0.1944
p.R1506C
DO48566
BLCA
ICGC
PPMY
ITCH
0.0833
p.E1513K
DO2819
BRCA
ICGC
PPMY
ITCH
0.2778
p.K1524N
DO2401
BRCA
ICGC
PPMY
ITCH
0.1667
p.A1507T
DO7798
COAD
ICGC
PPMY
ITCH
0.1111
p.A1517V
DO222884
COCA
ICGC
PPMY
ITCH
0.6936
p.A1517V
DO51761
STAD
ICGC
PPMY
ITCH
0.6936
p.E1505K
DO52079
HNSC
ICGC
PPMY
ITCH
0.0556
p.E1514K
DO37786
SKCM
ICGC
PPMY
ITCH
0.3056
p.E1514K
SIDM01504
Small Cell Lung Carcinoma
GDSC
PPMY
ITCH
0.3056
p.E1514K
ACH-000594
Lung Cancer
CCLE
PPMY
ITCH
0.3056
p.A1520T
DO38328
STAD
ICGC
PPMY
ITCH
0.2778
p.E1513D
DO41644
UCEC
ICGC
PPMY
ITCH
0.2778
p.S1527F
DO43755
UCEC
ICGC
PPMY
ITCH
0.0833
p.I1528V
DO41361
UCEC
ICGC
PPMY
ITCH
0.0556
p.F1523I
SIDM01296
Esophageal Carcinoma
GDSC
PPMY
ITCH
0.1944
p.L1511V
SIDM00189
Melanoma
GDSC
PPMY
ITCH
0.2222
p.L1511V
ACH-002098
Skin Cancer
CCLE
PPMY
ITCH
0.2222
p.L1511V
CP67-MEL
skin
COSMIC
PPMY
ITCH
0.2222
p.A1515V
SIDM00114
Non-Small Cell Lung Carcinoma
GDSC
PPMY
ITCH
0.6936
p.A1515V
H513
pleura
COSMIC
PPMY
ITCH
0.6936
p.A1526S
201T
lung
COSMIC
PPMY
ITCH
0.1111
p.D1507N
SW684
soft_tissue
COSMIC
PPMY
ITCH
0.1111
p.D1517N
SW684
soft_tissue
COSMIC
PPMY
ITCH
0.6932
p.R1506H
KMRC-1
kidney
COSMIC
PPMY
ITCH
0.0833
p.R1506H
HUH-6-clone5
liver
COSMIC
PPMY
ITCH
0.0833
p.R1506H
HuO-3N1
bone
COSMIC
PPMY
ITCH
0.0833
p.R1506H
SKG-IIIa
cervix
COSMIC
PPMY
ITCH
0.0833
p.R1506H
G-402
soft_tissue
COSMIC
PPMY
ITCH
0.0833
p.A1516S
201T
lung
COSMIC
PPMY
ITCH
0.7588
p.D1520N
SW684
soft_tissue
COSMIC
PPMY
ITCH
0.2778
p.A1512P
NCI-H720
lung
COSMIC
PPMY
ITCH
0.25
p.L1515V
CP67-MEL
skin
COSMIC
PPMY
ITCH
0.6765
p.A1519V
H513
pleura
COSMIC
PPMY
ITCH
0.3056
Drug responses associated with TRPM3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPMY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P13521
Secretogranin-2
ITCH
167:170
PPMY
ITCH,NEDD4
0.519
More...
Q01954
Zinc finger protein basonuclin-1
ITCH
74:77
PPMY
ITCH,NEDD4
0.8829
More...
Q86VH2
Kinesin-like protein KIF27
ITCH
608:611
PPMY
ITCH,NEDD4
0.6139
More...
Q86WA8
Lon protease homolog 2, peroxisomal
ITCH
640:643
PPMY
ITCH,NEDD4
0.768
More...
Q96LT9
RNA-binding region-containing protein 3
ITCH
206:209
PPMY
ITCH,NEDD4
0.9928
More...
Q9HBD1
Roquin-2
ITCH
703:706
PPMY
ITCH,NEDD4
0.9939
More...
Q9HCF6
Transient receptor potential cation channel subfamily M member 3
ITCH
1515:1518
PPMY
ITCH,NEDD4
0.8817
More...
Q9NRJ4
Tubby-related protein 4
ITCH
1241:1244
PPMY
ITCH,NEDD4
0.769
More...
O15255
CAAX box protein 1
ITCH
94:97
PPMY
ITCH,NEDD4
0.956
More...
Q8NA69
Testis-expressed protein 45
ITCH
496:499
PPMY
ITCH,NEDD4
0.9984
More...
Q9P281
BAH and coiled-coil domain-containing protein 1
ITCH
901:904
PPMY
ITCH,NEDD4
0.9559
More...