DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VLTSS
Uniprot ID:
Q5T7N3
Source protein:
KN motif and ankyrin repeat domain-containing protein 4
Source gene:
KANK4
Class:
DEG_SPOP_SBC_1
Location:
486:490
E3 ligase:
SPOP
DEGRON score:
0.7879
ASA_SCORE:
77.52
COIL:
0.6822
CONS_SCORE:
0.2713
DSS_SCORE:
0.5192
HELIX:
0.1094
FCONS_SCORE:
0.7838
RIG_SCORE:
0.7047
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E484K
TCGA-05-4422
LUAD
TCGA
VLTSS
DEG_SPOP_SBC_1
0.2778
p.E484K
TCGA-19-5956
GBM
TCGA
VLTSS
DEG_SPOP_SBC_1
0.2778
p.E484K
DO13863
GBM
ICGC
VLTSS
DEG_SPOP_SBC_1
0.2778
p.E484K
DO25907
LUAD
ICGC
VLTSS
DEG_SPOP_SBC_1
0.2778
p.S489F
TCGA-DK-AA6U
BLCA
TCGA
VLTSS
DEG_SPOP_SBC_1
0.7982
p.S489F
DO219008
BLCA
ICGC
VLTSS
DEG_SPOP_SBC_1
0.7982
p.S490F
TCGA-FS-A1ZA
SKCM
TCGA
VLTSS
DEG_SPOP_SBC_1
0.7982
p.S490F
DO37551
SKCM
ICGC
VLTSS
DEG_SPOP_SBC_1
0.7982
p.S493I
TCGA-IB-7651
PAAD
TCGA
VLTSS
DEG_SPOP_SBC_1
0.25
p.S493I
DO46657
PAAD
ICGC
VLTSS
DEG_SPOP_SBC_1
0.25
p.S489Y
DO47240
RECA
ICGC
VLTSS
DEG_SPOP_SBC_1
0.712
p.Q481E
SIDM00114
Non-Small Cell Lung Carcinoma
GDSC
VLTSS
DEG_SPOP_SBC_1
0.1944
p.Q481E
H513
pleura
COSMIC
VLTSS
DEG_SPOP_SBC_1
0.1944
p.H492Y
SIDM01560
Rhabdomyosarcoma
GDSC
VLTSS
DEG_SPOP_SBC_1
0.2778
p.H492Y
ACH-000133
Unknown
CCLE
VLTSS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with KANK4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95600
Krueppel-like factor 8
DEG_SPOP_SBC_1
144:148
VLTSS
SPOP
0.9812
More...
Q5QGS0
Neurite extension and migration factor
DEG_SPOP_SBC_1
862:866
VLTSS
SPOP
0.9973
More...
Q5T7N3
KN motif and ankyrin repeat domain-containing protein 4
DEG_SPOP_SBC_1
486:490
VLTSS
SPOP
0.7879
More...
Q8N2C7
Protein unc-80 homolog
DEG_SPOP_SBC_1
3151:3155
VLTSS
SPOP
0.5821
More...
Q8NCF5
NFATC2-interacting protein
DEG_SPOP_SBC_1
334:338
VLTSS
SPOP
0.9389
More...
Q8TD26
Chromodomain-helicase-DNA-binding protein 6
DEG_SPOP_SBC_1
2129:2133
VLTSS
SPOP
0.9858
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
4778:4782
VLTSS
SPOP
0.5936
More...
Q92879
CUGBP Elav-like family member 1
DEG_SPOP_SBC_1
293:297
VLTSS
SPOP
0.8617
More...
Q9Y5T5
Ubiquitin carboxyl-terminal hydrolase 16
DEG_SPOP_SBC_1
548:552
VLTSS
SPOP
0.9998
More...