DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VLTSS
Uniprot ID:
Q92879
Source protein:
CUGBP Elav-like family member 1
Source gene:
CELF1
Class:
DEG_SPOP_SBC_1
Location:
293:297
E3 ligase:
SPOP
DEGRON score:
0.8617
ASA_SCORE:
35.64
COIL:
0.7642
CONS_SCORE:
0.3247
DSS_SCORE:
0.5093
HELIX:
0.1252
FCONS_SCORE:
0.9527
RIG_SCORE:
0.6057
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A294S
TCGA-78-8640
LUAD
TCGA
VLTSS
DEG_SPOP_SBC_1
0.7588
p.Q288R
TCGA-DI-A1BU
UCEC
TCGA
VLTSS
DEG_SPOP_SBC_1
0.1944
p.S288G
DO9708
COAD
ICGC
VLTSS
DEG_SPOP_SBC_1
0.1944
p.S299L
DO50175
LGG
ICGC
VLTSS
DEG_SPOP_SBC_1
0.2778
p.S298R
DO228985
LICA
ICGC
VLTSS
DEG_SPOP_SBC_1
0.3056
p.P297H
DO229022
LICA
ICGC
VLTSS
DEG_SPOP_SBC_1
0.7694
p.P289L
DO40900
UCEC
ICGC
VLTSS
DEG_SPOP_SBC_1
0.2222
p.L287I
DO41235
UCEC
ICGC
VLTSS
DEG_SPOP_SBC_1
0.1667
p.A283V
DO43971
UCEC
ICGC
VLTSS
DEG_SPOP_SBC_1
0.0556
p.S297P
ACH-000999
Colon/Colorectal Cancer
CCLE
VLTSS
DEG_SPOP_SBC_1
0.6752
p.S297P
SNU-1040
large_intestine
COSMIC
VLTSS
DEG_SPOP_SBC_1
0.6752
p.S293P
SNU-1040
large_intestine
COSMIC
VLTSS
DEG_SPOP_SBC_1
0.6752
p.S296P
SNU-1040
large_intestine
COSMIC
VLTSS
DEG_SPOP_SBC_1
0.6752
Drug responses associated with CELF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95600
Krueppel-like factor 8
DEG_SPOP_SBC_1
144:148
VLTSS
SPOP
0.9812
More...
Q5QGS0
Neurite extension and migration factor
DEG_SPOP_SBC_1
862:866
VLTSS
SPOP
0.9973
More...
Q5T7N3
KN motif and ankyrin repeat domain-containing protein 4
DEG_SPOP_SBC_1
486:490
VLTSS
SPOP
0.7879
More...
Q8N2C7
Protein unc-80 homolog
DEG_SPOP_SBC_1
3151:3155
VLTSS
SPOP
0.5821
More...
Q8NCF5
NFATC2-interacting protein
DEG_SPOP_SBC_1
334:338
VLTSS
SPOP
0.9389
More...
Q8TD26
Chromodomain-helicase-DNA-binding protein 6
DEG_SPOP_SBC_1
2129:2133
VLTSS
SPOP
0.9858
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
4778:4782
VLTSS
SPOP
0.5936
More...
Q92879
CUGBP Elav-like family member 1
DEG_SPOP_SBC_1
293:297
VLTSS
SPOP
0.8617
More...
Q9Y5T5
Ubiquitin carboxyl-terminal hydrolase 16
DEG_SPOP_SBC_1
548:552
VLTSS
SPOP
0.9998
More...