DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VRSSS
Uniprot ID:
O95819
Source protein:
Mitogen-activated protein kinase kinase kinase kinase 4
Source gene:
MAP4K4
Class:
DEG_SPOP_SBC_1
Location:
706:710
E3 ligase:
SPOP
DEGRON score:
0.9811
ASA_SCORE:
79.9
COIL:
0.7904
CONS_SCORE:
0.2927
DSS_SCORE:
0.7497
HELIX:
0.0622
FCONS_SCORE:
0.8512
RIG_SCORE:
0.5798
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R703C
TCGA-32-2638
GBM
TCGA
VRSSS
DEG_SPOP_SBC_1
0.25
p.R703C
TCGA-PK-A5HB
ACC
TCGA
VRSSS
DEG_SPOP_SBC_1
0.25
p.G701R
TCGA-A6-5661
COAD
TCGA
VRSSS
DEG_SPOP_SBC_1
0.1944
p.R719H
TCGA-AP-A051
UCEC
TCGA
VRSSS
DEG_SPOP_SBC_1
0.0833
p.S717C
TCGA-ED-A459
LIHC
TCGA
VRSSS
DEG_SPOP_SBC_1
0.5833
p.P719S
DO228075
EOPC
ICGC
VRSSS
DEG_SPOP_SBC_1
0.0833
p.D717Y
DO228986
LICA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.5833
p.D717Y
DO229041
LICA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.5833
p.R700W
DO229055
LICA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.6111
p.R700W
DO41927
UCEC
ICGC
VRSSS
DEG_SPOP_SBC_1
0.6111
p.S703L
DO23846
LUAD
ICGC
VRSSS
DEG_SPOP_SBC_1
0.25
p.E720D
DO26814
LUSC
ICGC
VRSSS
DEG_SPOP_SBC_1
0.0556
p.N708K
DO38404
STAD
ICGC
VRSSS
DEG_SPOP_SBC_1
0.6918
p.R713G
DO229272
THCA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.25
p.K701N
SIDM00193
Colorectal Carcinoma
GDSC
VRSSS
DEG_SPOP_SBC_1
0.1944
p.K701N
SNU-81
large_intestine
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.1944
p.K700N
SNU-81
large_intestine
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.6111
p.R714Q
SNU-81
large_intestine
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.2222
p.R696W
LoVo
large_intestine
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.5
p.R702W
LoVo
large_intestine
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.2222
p.S712T
C3A
liver
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.7222
Drug responses associated with MAP4K4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95819
Mitogen-activated protein kinase kinase kinase kinase 4
DEG_SPOP_SBC_1
706:710
VRSSS
SPOP
0.9811
More...
P01375
Tumor necrosis factor
DEG_SPOP_SBC_1
77:81
VRSSS
SPOP
0.5812
More...
P38159
RNA-binding motif protein, X chromosome
DEG_SPOP_SBC_1
171:175
VRSSS
SPOP
0.9851
More...
Q6ZSJ9
Protein shisa-6
DEG_SPOP_SBC_1
248:252
VRSSS
SPOP
0.8915
More...
Q70CQ4
Ubiquitin carboxyl-terminal hydrolase 31
DEG_SPOP_SBC_1
1196:1200
VRSSS
SPOP
0.697
More...
Q86VV4
Ran-binding protein 3-like
DEG_SPOP_SBC_1
73:77
VRSSS
SPOP
0.9807
More...
Q9UJD0
Regulating synaptic membrane exocytosis protein 3
DEG_SPOP_SBC_1
18:22
VRSSS
SPOP
0.9843
More...
A8K979
ERI1 exoribonuclease 2
DEG_SPOP_SBC_1
565:569
VRSSS
SPOP
0.9149
More...
Q5VVW2
GTPase-activating Rap/Ran-GAP domain-like protein 3
DEG_SPOP_SBC_1
950:954
VRSSS
SPOP
0.6326
More...
Q96E39
RNA binding motif protein, X-linked-like-1
DEG_SPOP_SBC_1
171:175
VRSSS
SPOP
0.9696
More...