DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VRSSS
Uniprot ID:
Q5VVW2
Source protein:
GTPase-activating Rap/Ran-GAP domain-like protein 3
Source gene:
GARNL3
Class:
DEG_SPOP_SBC_1
Location:
950:954
E3 ligase:
SPOP
DEGRON score:
0.6326
ASA_SCORE:
69.26
COIL:
0.6268
CONS_SCORE:
0.2243
DSS_SCORE:
0.7844
HELIX:
0.0618
FCONS_SCORE:
0.8633
RIG_SCORE:
0.5635
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A949V
TCGA-A5-A0G1
UCEC
TCGA
VRSSS
DEG_SPOP_SBC_1
0.3056
p.Q942R
TCGA-AA-3510
COAD
TCGA
VRSSS
DEG_SPOP_SBC_1
0.1111
p.S941T
TCGA-JY-A6FH
ESCA
TCGA
VRSSS
DEG_SPOP_SBC_1
0.0833
p.E948K
DO49964
CESC
ICGC
VRSSS
DEG_SPOP_SBC_1
0.2778
p.P951S
DO38111
SKCM
ICGC
VRSSS
DEG_SPOP_SBC_1
0.6752
p.A964V
DO38427
STAD
ICGC
VRSSS
DEG_SPOP_SBC_1
0.0556
p.A964S
OVKATE
ovary
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.0556
Drug responses associated with GARNL3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95819
Mitogen-activated protein kinase kinase kinase kinase 4
DEG_SPOP_SBC_1
706:710
VRSSS
SPOP
0.9811
More...
P01375
Tumor necrosis factor
DEG_SPOP_SBC_1
77:81
VRSSS
SPOP
0.5812
More...
P38159
RNA-binding motif protein, X chromosome
DEG_SPOP_SBC_1
171:175
VRSSS
SPOP
0.9851
More...
Q6ZSJ9
Protein shisa-6
DEG_SPOP_SBC_1
248:252
VRSSS
SPOP
0.8915
More...
Q70CQ4
Ubiquitin carboxyl-terminal hydrolase 31
DEG_SPOP_SBC_1
1196:1200
VRSSS
SPOP
0.697
More...
Q86VV4
Ran-binding protein 3-like
DEG_SPOP_SBC_1
73:77
VRSSS
SPOP
0.9807
More...
Q9UJD0
Regulating synaptic membrane exocytosis protein 3
DEG_SPOP_SBC_1
18:22
VRSSS
SPOP
0.9843
More...
A8K979
ERI1 exoribonuclease 2
DEG_SPOP_SBC_1
565:569
VRSSS
SPOP
0.9149
More...
Q5VVW2
GTPase-activating Rap/Ran-GAP domain-like protein 3
DEG_SPOP_SBC_1
950:954
VRSSS
SPOP
0.6326
More...
Q96E39
RNA binding motif protein, X-linked-like-1
DEG_SPOP_SBC_1
171:175
VRSSS
SPOP
0.9696
More...