DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VRSSS
Uniprot ID:
Q9UJD0
Source protein:
Regulating synaptic membrane exocytosis protein 3
Source gene:
RIMS3
Class:
DEG_SPOP_SBC_1
Location:
18:22
E3 ligase:
SPOP
DEGRON score:
0.9843
ASA_SCORE:
81.16
COIL:
0.701
CONS_SCORE:
0.5799
DSS_SCORE:
0.4987
HELIX:
0.0252
FCONS_SCORE:
1.4493
RIG_SCORE:
0.6877
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A13S
TCGA-17-Z045
LUAD
TCGA
VRSSS
DEG_SPOP_SBC_1
0.1944
p.G12E
TCGA-A5-A0G1
UCEC
TCGA
VRSSS
DEG_SPOP_SBC_1
0.1667
p.G12E
DO42472
UCEC
ICGC
VRSSS
DEG_SPOP_SBC_1
0.1667
p.R19W
TCGA-AA-3821
COAD
TCGA
VRSSS
DEG_SPOP_SBC_1
0.7523
p.R19W
TCGA-AD-A5EJ
COAD
TCGA
VRSSS
DEG_SPOP_SBC_1
0.7523
p.R19W
DO9314
COAD
ICGC
VRSSS
DEG_SPOP_SBC_1
0.7523
p.R19W
DO50090
COAD
ICGC
VRSSS
DEG_SPOP_SBC_1
0.7523
p.R19W
DO233652
GACA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.7523
p.R19L
TCGA-D3-A1Q3
SKCM
TCGA
VRSSS
DEG_SPOP_SBC_1
0.7316
p.R19L
DO47509
SKCM
ICGC
VRSSS
DEG_SPOP_SBC_1
0.7316
p.G25C
TCGA-D3-A2JK
SKCM
TCGA
VRSSS
DEG_SPOP_SBC_1
0.25
p.G25C
DO37619
SKCM
ICGC
VRSSS
DEG_SPOP_SBC_1
0.25
p.Q31K
TCGA-D3-A3CE
SKCM
TCGA
VRSSS
DEG_SPOP_SBC_1
0.0833
p.Q31K
DO37405
SKCM
ICGC
VRSSS
DEG_SPOP_SBC_1
0.0833
p.E26K
TCGA-EB-A3Y7
SKCM
TCGA
VRSSS
DEG_SPOP_SBC_1
0.2222
p.E26K
DO37499
SKCM
ICGC
VRSSS
DEG_SPOP_SBC_1
0.2222
p.E26K
SIDM01175
Other Sarcomas
GDSC
VRSSS
DEG_SPOP_SBC_1
0.2222
p.E26K
ACH-002309
Sarcoma
CCLE
VRSSS
DEG_SPOP_SBC_1
0.2222
p.E26K
SW684
soft_tissue
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.2222
p.R19Q
TCGA-ER-A193
SKCM
TCGA
VRSSS
DEG_SPOP_SBC_1
0.6218
p.R19Q
DO47368
SKCM
ICGC
VRSSS
DEG_SPOP_SBC_1
0.6218
p.S22R
TCGA-VS-A8EJ
CESC
TCGA
VRSSS
DEG_SPOP_SBC_1
0.8538
p.S22R
DO51622
CESC
ICGC
VRSSS
DEG_SPOP_SBC_1
0.8538
p.S11F
TCGA-W3-A828
SKCM
TCGA
VRSSS
DEG_SPOP_SBC_1
0.1389
p.S11F
DO51273
SKCM
ICGC
VRSSS
DEG_SPOP_SBC_1
0.1389
p.G29R
DO233270
GACA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.1389
p.P8S
DO220885
MELA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.0556
p.S22T
DO220891
MELA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.7116
p.S10A
DO38404
STAD
ICGC
VRSSS
DEG_SPOP_SBC_1
0.1111
p.G12R
SIDM00985
Burkitt's Lymphoma
GDSC
VRSSS
DEG_SPOP_SBC_1
0.1667
p.G12R
SIDM00128
Head and Neck Carcinoma
GDSC
VRSSS
DEG_SPOP_SBC_1
0.1667
p.G12R
SIDM01183
Other Solid Cancers
GDSC
VRSSS
DEG_SPOP_SBC_1
0.1667
p.G12R
SIDM00686
Endometrial Carcinoma
GDSC
VRSSS
DEG_SPOP_SBC_1
0.1667
p.G12R
SIDM00140
Melanoma
GDSC
VRSSS
DEG_SPOP_SBC_1
0.1667
p.G25S
SIDM01007
T-Lymphoblastic Leukemia
GDSC
VRSSS
DEG_SPOP_SBC_1
0.25
p.G25S
ACH-002256
Leukemia
CCLE
VRSSS
DEG_SPOP_SBC_1
0.25
p.G25S
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.25
p.V17A
ACH-001664
Gastric Cancer
CCLE
VRSSS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with RIMS3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95819
Mitogen-activated protein kinase kinase kinase kinase 4
DEG_SPOP_SBC_1
706:710
VRSSS
SPOP
0.9811
More...
P01375
Tumor necrosis factor
DEG_SPOP_SBC_1
77:81
VRSSS
SPOP
0.5812
More...
P38159
RNA-binding motif protein, X chromosome
DEG_SPOP_SBC_1
171:175
VRSSS
SPOP
0.9851
More...
Q6ZSJ9
Protein shisa-6
DEG_SPOP_SBC_1
248:252
VRSSS
SPOP
0.8915
More...
Q70CQ4
Ubiquitin carboxyl-terminal hydrolase 31
DEG_SPOP_SBC_1
1196:1200
VRSSS
SPOP
0.697
More...
Q86VV4
Ran-binding protein 3-like
DEG_SPOP_SBC_1
73:77
VRSSS
SPOP
0.9807
More...
Q9UJD0
Regulating synaptic membrane exocytosis protein 3
DEG_SPOP_SBC_1
18:22
VRSSS
SPOP
0.9843
More...
A8K979
ERI1 exoribonuclease 2
DEG_SPOP_SBC_1
565:569
VRSSS
SPOP
0.9149
More...
Q5VVW2
GTPase-activating Rap/Ran-GAP domain-like protein 3
DEG_SPOP_SBC_1
950:954
VRSSS
SPOP
0.6326
More...
Q96E39
RNA binding motif protein, X-linked-like-1
DEG_SPOP_SBC_1
171:175
VRSSS
SPOP
0.9696
More...