DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VRSSS
Uniprot ID:
Q6ZSJ9
Source protein:
Protein shisa-6
Source gene:
SHISA6
Class:
DEG_SPOP_SBC_1
Location:
248:252
E3 ligase:
SPOP
DEGRON score:
0.8915
ASA_SCORE:
76.98
COIL:
0.8772
CONS_SCORE:
0.6076
DSS_SCORE:
0.6985
HELIX:
0.0638
FCONS_SCORE:
0.9141
RIG_SCORE:
0.5927
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T261M
TCGA-B5-A3FA
UCEC
TCGA
VRSSS
DEG_SPOP_SBC_1
0.0833
p.T261M
DO45299
LIRI
ICGC
VRSSS
DEG_SPOP_SBC_1
0.0833
p.T261M
DO52402
UCEC
ICGC
VRSSS
DEG_SPOP_SBC_1
0.0833
p.T261M
SIDM00240
Cervical Carcinoma
GDSC
VRSSS
DEG_SPOP_SBC_1
0.0833
p.T261M
ACH-002180
Cervical Cancer
CCLE
VRSSS
DEG_SPOP_SBC_1
0.0833
p.T261M
OMC-1
cervix
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.0833
p.I238V
TCGA-D8-A1XQ
BRCA
TCGA
VRSSS
DEG_SPOP_SBC_1
0.0556
p.I238V
DO3095
BRCA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.0556
p.V248A
TCGA-EO-A3B0
UCEC
TCGA
VRSSS
DEG_SPOP_SBC_1
0.5825
p.V248A
DO219773
UCEC
ICGC
VRSSS
DEG_SPOP_SBC_1
0.5825
p.R260H
DO227990
COCA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.1111
p.R260H
DO223069
ESCA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.1111
p.R260H
DO233885
GACA
ICGC
VRSSS
DEG_SPOP_SBC_1
0.1111
p.S252F
SIDM00652
Small Cell Lung Carcinoma
GDSC
VRSSS
DEG_SPOP_SBC_1
0.7982
p.S252F
ACH-000780
Lung Cancer
CCLE
VRSSS
DEG_SPOP_SBC_1
0.7982
p.S252F
NCI-H1105
lung
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.7982
p.S241Y
SIDM00282
Colorectal Carcinoma
GDSC
VRSSS
DEG_SPOP_SBC_1
0.1389
p.S241Y
ACH-000998
Colon/Colorectal Cancer
CCLE
VRSSS
DEG_SPOP_SBC_1
0.1389
p.S241Y
CW-2
large_intestine
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.1389
p.T257S
SIDM00114
Non-Small Cell Lung Carcinoma
GDSC
VRSSS
DEG_SPOP_SBC_1
0.6389
p.T257S
H513
pleura
COSMIC
VRSSS
DEG_SPOP_SBC_1
0.6389
p.P247L
ACH-001786
Colon/Colorectal Cancer
CCLE
VRSSS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with SHISA6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95819
Mitogen-activated protein kinase kinase kinase kinase 4
DEG_SPOP_SBC_1
706:710
VRSSS
SPOP
0.9811
More...
P01375
Tumor necrosis factor
DEG_SPOP_SBC_1
77:81
VRSSS
SPOP
0.5812
More...
P38159
RNA-binding motif protein, X chromosome
DEG_SPOP_SBC_1
171:175
VRSSS
SPOP
0.9851
More...
Q6ZSJ9
Protein shisa-6
DEG_SPOP_SBC_1
248:252
VRSSS
SPOP
0.8915
More...
Q70CQ4
Ubiquitin carboxyl-terminal hydrolase 31
DEG_SPOP_SBC_1
1196:1200
VRSSS
SPOP
0.697
More...
Q86VV4
Ran-binding protein 3-like
DEG_SPOP_SBC_1
73:77
VRSSS
SPOP
0.9807
More...
Q9UJD0
Regulating synaptic membrane exocytosis protein 3
DEG_SPOP_SBC_1
18:22
VRSSS
SPOP
0.9843
More...
A8K979
ERI1 exoribonuclease 2
DEG_SPOP_SBC_1
565:569
VRSSS
SPOP
0.9149
More...
Q5VVW2
GTPase-activating Rap/Ran-GAP domain-like protein 3
DEG_SPOP_SBC_1
950:954
VRSSS
SPOP
0.6326
More...
Q96E39
RNA binding motif protein, X-linked-like-1
DEG_SPOP_SBC_1
171:175
VRSSS
SPOP
0.9696
More...