DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VTSST
Uniprot ID:
P49790
Source protein:
Nuclear pore complex protein Nup153
Source gene:
NUP153
Class:
DEG_SPOP_SBC_1
Location:
303:307
E3 ligase:
SPOP
DEGRON score:
0.9985
ASA_SCORE:
69.34
COIL:
0.7288
CONS_SCORE:
0.5694
DSS_SCORE:
0.3876
HELIX:
0.2248
FCONS_SCORE:
1.151
RIG_SCORE:
0.7204
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G302S
TCGA-AP-A0LM
UCEC
TCGA
VTSST
DEG_SPOP_SBC_1
0.3056
p.G302S
DO43306
UCEC
ICGC
VTSST
DEG_SPOP_SBC_1
0.3056
p.Q295R
TCGA-DF-A2KU
UCEC
TCGA
VTSST
DEG_SPOP_SBC_1
0.1111
p.Q295R
DO223286
UCEC
ICGC
VTSST
DEG_SPOP_SBC_1
0.1111
p.A293D
DO229032
LICA
ICGC
VTSST
DEG_SPOP_SBC_1
0.0556
p.S300Y
DO229036
LICA
ICGC
VTSST
DEG_SPOP_SBC_1
0.25
p.T307K
DO229036
LICA
ICGC
VTSST
DEG_SPOP_SBC_1
0.7306
p.Q295K
DO229045
LICA
ICGC
VTSST
DEG_SPOP_SBC_1
0.1111
p.K317R
SIDM02063
Colorectal Carcinoma
GDSC
VTSST
DEG_SPOP_SBC_1
0.5
p.K317N
SIDM00193
Colorectal Carcinoma
GDSC
VTSST
DEG_SPOP_SBC_1
0.5
p.K317N
ACH-000991
Colon/Colorectal Cancer
CCLE
VTSST
DEG_SPOP_SBC_1
0.5
p.K317N
SNU-81
large_intestine
COSMIC
VTSST
DEG_SPOP_SBC_1
0.5
Drug responses associated with NUP153 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A4UGR9
Xin actin-binding repeat-containing protein 2
DEG_SPOP_SBC_1
258:262
VTSST
SPOP
0.8479
More...
P35908
Keratin, type II cytoskeletal 2 epidermal
DEG_SPOP_SBC_1
503:507
VTSST
SPOP
0.842
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
303:307
VTSST
SPOP
0.9985
More...
Q06330
Recombining binding protein suppressor of hairless
DEG_SPOP_SBC_1
491:495
VTSST
SPOP
0.9106
More...
Q5T1M5
FK506-binding protein 15
DEG_SPOP_SBC_1
1128:1132
VTSST
SPOP
0.8902
More...
Q6P0Q8
Microtubule-associated serine/threonine-protein kinase 2
DEG_SPOP_SBC_1
178:182
VTSST
SPOP
0.8042
More...
Q8TEU7
Rap guanine nucleotide exchange factor 6
DEG_SPOP_SBC_1
1479:1483
VTSST
SPOP
0.8438
More...
Q9NPG3
Ubinuclein-1
DEG_SPOP_SBC_1
1001:1005
VTSST
SPOP
0.9937
More...
Q9UJM3
ERBB receptor feedback inhibitor 1
DEG_SPOP_SBC_1
305:309
VTSST
SPOP
0.9829
More...