DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VTSST
Uniprot ID:
Q06330
Source protein:
Recombining binding protein suppressor of hairless
Source gene:
RBPJ
Class:
DEG_SPOP_SBC_1
Location:
491:495
E3 ligase:
SPOP
DEGRON score:
0.9106
ASA_SCORE:
84.68
COIL:
0.7624
CONS_SCORE:
0.3008
DSS_SCORE:
0.6362
HELIX:
0.0442
FCONS_SCORE:
1.058
RIG_SCORE:
0.6838
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S485G
TCGA-B5-A1MX
UCEC
TCGA
VTSST
DEG_SPOP_SBC_1
0.1667
p.N487D
TCGA-D1-A17Q
UCEC
TCGA
VTSST
DEG_SPOP_SBC_1
0.2222
p.V498A
TCGA-VQ-A8PO
STAD
TCGA
VTSST
DEG_SPOP_SBC_1
0.25
p.A483P
DO229052
LICA
ICGC
VTSST
DEG_SPOP_SBC_1
0.1111
p.V484A
DO51773
STAD
ICGC
VTSST
DEG_SPOP_SBC_1
0.1389
p.T489S
SIDM01015
Chronic Myelogenous Leukemia
GDSC
VTSST
DEG_SPOP_SBC_1
0.2778
p.T489S
JURL-MK1
haematopoietic_and_lymphoid_tissue
COSMIC
VTSST
DEG_SPOP_SBC_1
0.2778
p.A484T
SIDM01237
Hepatocellular Carcinoma
GDSC
VTSST
DEG_SPOP_SBC_1
0.1389
p.A484T
SIDM00956
Esophageal Squamous Cell Carcinoma
GDSC
VTSST
DEG_SPOP_SBC_1
0.1389
Drug responses associated with RBPJ mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A4UGR9
Xin actin-binding repeat-containing protein 2
DEG_SPOP_SBC_1
258:262
VTSST
SPOP
0.8479
More...
P35908
Keratin, type II cytoskeletal 2 epidermal
DEG_SPOP_SBC_1
503:507
VTSST
SPOP
0.842
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
303:307
VTSST
SPOP
0.9985
More...
Q06330
Recombining binding protein suppressor of hairless
DEG_SPOP_SBC_1
491:495
VTSST
SPOP
0.9106
More...
Q5T1M5
FK506-binding protein 15
DEG_SPOP_SBC_1
1128:1132
VTSST
SPOP
0.8902
More...
Q6P0Q8
Microtubule-associated serine/threonine-protein kinase 2
DEG_SPOP_SBC_1
178:182
VTSST
SPOP
0.8042
More...
Q8TEU7
Rap guanine nucleotide exchange factor 6
DEG_SPOP_SBC_1
1479:1483
VTSST
SPOP
0.8438
More...
Q9NPG3
Ubinuclein-1
DEG_SPOP_SBC_1
1001:1005
VTSST
SPOP
0.9937
More...
Q9UJM3
ERBB receptor feedback inhibitor 1
DEG_SPOP_SBC_1
305:309
VTSST
SPOP
0.9829
More...