DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
NKENE
Uniprot ID:
P30304
Source protein:
M-phase inducer phosphatase 1
Source gene:
CDC25A
Class:
DEG_APCC_KENBOX_2
Location:
140:144
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.593
ASA_SCORE:
103.18
COIL:
0.539
CONS_SCORE:
0.2979
DSS_SCORE:
0.4532
HELIX:
0.4426
FCONS_SCORE:
0.9634
RIG_SCORE:
0.7015
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P154T
TCGA-AX-A06F
UCEC
TCGA
NKENE
DEG_APCC_KENBOX_2
0.0556
p.P154T
DO41752
UCEC
ICGC
NKENE
DEG_APCC_KENBOX_2
0.0556
p.F148L
TCGA-CK-4951
COAD
TCGA
NKENE
DEG_APCC_KENBOX_2
0.2222
p.F148L
DO10582
COAD
ICGC
NKENE
DEG_APCC_KENBOX_2
0.2222
p.E139D
TCGA-FT-A3EE
BLCA
TCGA
NKENE
DEG_APCC_KENBOX_2
0.3056
p.E139D
DO720
BLCA
ICGC
NKENE
DEG_APCC_KENBOX_2
0.3056
p.D130G
SIDM01307
Colorectal Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.0556
p.I131V
SIDM00176
Chondrosarcoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.0833
p.A145D
ACH-001422
Prostate Cancer
CCLE
NKENE
DEG_APCC_KENBOX_2
0.3056
Drug responses associated with CDC25A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of NKENE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P25054
Adenomatous polyposis coli protein
DEG_APCC_KENBOX_2
1981:1985
NKENE
APC,CDC20,FZR1
0.5172
More...
P30304
M-phase inducer phosphatase 1
DEG_APCC_KENBOX_2
140:144
NKENE
APC,CDC20,FZR1
0.593
More...
Q14207
Protein NPAT
DEG_APCC_KENBOX_2
1166:1170
NKENE
APC,CDC20,FZR1
0.9827
More...
Q7Z443
Polycystic kidney disease protein 1-like 3
DEG_APCC_KENBOX_2
1225:1229
NKENE
APC,CDC20,FZR1
0.7074
More...
Q9H079
KATNB1-like protein 1
DEG_APCC_KENBOX_2
99:103
NKENE
APC,CDC20,FZR1
0.7472
More...
Q9HAU5
Regulator of nonsense transcripts 2
DEG_APCC_KENBOX_2
1083:1087
NKENE
APC,CDC20,FZR1
0.9955
More...
Q9UHB9
Signal recognition particle subunit SRP68
DEG_APCC_KENBOX_2
38:42
NKENE
APC,CDC20,FZR1
0.7271
More...
Q9HCK1
DBF4-type zinc finger-containing protein 2
DEG_APCC_KENBOX_2
906:910
NKENE
APC,CDC20,FZR1
0.9736
More...
Q96MH7
Uncharacterized protein C5orf34
DEG_APCC_KENBOX_2
193:197
NKENE
APC,CDC20,FZR1
0.702
More...