DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
NKENE
Uniprot ID:
Q9HAU5
Source protein:
Regulator of nonsense transcripts 2
Source gene:
UPF2
Class:
DEG_APCC_KENBOX_2
Location:
1083:1087
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9955
ASA_SCORE:
126.32
COIL:
0.8404
CONS_SCORE:
0.2901
DSS_SCORE:
0.7891
HELIX:
0.1442
FCONS_SCORE:
1.041
RIG_SCORE:
0.6443
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I1097V
TCGA-DX-AB2V
SARC
TCGA
NKENE
DEG_APCC_KENBOX_2
0.0556
p.I1097V
DO220093
SARC
ICGC
NKENE
DEG_APCC_KENBOX_2
0.0556
p.E1087D
TCGA-EE-A2M5
SKCM
TCGA
NKENE
DEG_APCC_KENBOX_2
0.5647
p.E1087D
DO222423
MELA
ICGC
NKENE
DEG_APCC_KENBOX_2
0.5647
p.E1087D
DO37425
SKCM
ICGC
NKENE
DEG_APCC_KENBOX_2
0.5647
p.T1080K
DO229037
LICA
ICGC
NKENE
DEG_APCC_KENBOX_2
0.25
p.V1095A
SIDM00661
B-Cell Non-Hodgkin's Lymphoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.1111
p.V1095A
ACH-000914
Lymphoma
CCLE
NKENE
DEG_APCC_KENBOX_2
0.1111
p.V1095A
HT
haematopoietic_and_lymphoid_tissue
COSMIC
NKENE
DEG_APCC_KENBOX_2
0.1111
p.E1085D
SIDM00390
T-Cell Non-Hodgkin's Lymphoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.6758
p.E1085D
ACH-000664
Lymphoma
CCLE
NKENE
DEG_APCC_KENBOX_2
0.6758
p.E1085D
SU-DHL-1
haematopoietic_and_lymphoid_tissue
COSMIC
NKENE
DEG_APCC_KENBOX_2
0.6758
p.E1094K
SIDM00140
Melanoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.1389
p.E1094K
COLO-792
skin
COSMIC
NKENE
DEG_APCC_KENBOX_2
0.1389
Drug responses associated with UPF2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of NKENE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P25054
Adenomatous polyposis coli protein
DEG_APCC_KENBOX_2
1981:1985
NKENE
APC,CDC20,FZR1
0.5172
More...
P30304
M-phase inducer phosphatase 1
DEG_APCC_KENBOX_2
140:144
NKENE
APC,CDC20,FZR1
0.593
More...
Q14207
Protein NPAT
DEG_APCC_KENBOX_2
1166:1170
NKENE
APC,CDC20,FZR1
0.9827
More...
Q7Z443
Polycystic kidney disease protein 1-like 3
DEG_APCC_KENBOX_2
1225:1229
NKENE
APC,CDC20,FZR1
0.7074
More...
Q9H079
KATNB1-like protein 1
DEG_APCC_KENBOX_2
99:103
NKENE
APC,CDC20,FZR1
0.7472
More...
Q9HAU5
Regulator of nonsense transcripts 2
DEG_APCC_KENBOX_2
1083:1087
NKENE
APC,CDC20,FZR1
0.9955
More...
Q9UHB9
Signal recognition particle subunit SRP68
DEG_APCC_KENBOX_2
38:42
NKENE
APC,CDC20,FZR1
0.7271
More...
Q9HCK1
DBF4-type zinc finger-containing protein 2
DEG_APCC_KENBOX_2
906:910
NKENE
APC,CDC20,FZR1
0.9736
More...
Q96MH7
Uncharacterized protein C5orf34
DEG_APCC_KENBOX_2
193:197
NKENE
APC,CDC20,FZR1
0.702
More...