DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
NKENE
Uniprot ID:
Q7Z443
Source protein:
Polycystic kidney disease protein 1-like 3
Source gene:
PKD1L3
Class:
DEG_APCC_KENBOX_2
Location:
1225:1229
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7074
ASA_SCORE:
108.6
COIL:
0.6612
CONS_SCORE:
0.5386
DSS_SCORE:
0.3887
HELIX:
0.3274
FCONS_SCORE:
1.2323
RIG_SCORE:
0.7719
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T1232R
SIDM00441
Acute Myeloid Leukemia
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00447
B-Lymphoblastic Leukemia
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00057
Neuroblastoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM01099
Neuroblastoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00763
Non-Small Cell Lung Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00538
Esophageal Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM01044
Other Solid Cancers
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00418
Thyroid Gland Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM01079
Melanoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00510
Small Cell Lung Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00486
Squamous Cell Lung Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00983
Bladder Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00181
Bladder Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00006
Other Solid Cancers
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00534
Colorectal Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00738
Non-Small Cell Lung Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.T1232R
SIDM00519
Mesothelioma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
p.L1236S
SIDM01058
B-Cell Non-Hodgkin's Lymphoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.1389
p.L1236S
SIDM00156
Neuroblastoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.1389
p.L1236S
SIDM00833
Colorectal Carcinoma
GDSC
NKENE
DEG_APCC_KENBOX_2
0.1389
p.P1222S
SIDM00121
T-Lymphoblastic Leukemia
GDSC
NKENE
DEG_APCC_KENBOX_2
0.25
Drug responses associated with PKD1L3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of NKENE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P25054
Adenomatous polyposis coli protein
DEG_APCC_KENBOX_2
1981:1985
NKENE
APC,CDC20,FZR1
0.5172
More...
P30304
M-phase inducer phosphatase 1
DEG_APCC_KENBOX_2
140:144
NKENE
APC,CDC20,FZR1
0.593
More...
Q14207
Protein NPAT
DEG_APCC_KENBOX_2
1166:1170
NKENE
APC,CDC20,FZR1
0.9827
More...
Q7Z443
Polycystic kidney disease protein 1-like 3
DEG_APCC_KENBOX_2
1225:1229
NKENE
APC,CDC20,FZR1
0.7074
More...
Q9H079
KATNB1-like protein 1
DEG_APCC_KENBOX_2
99:103
NKENE
APC,CDC20,FZR1
0.7472
More...
Q9HAU5
Regulator of nonsense transcripts 2
DEG_APCC_KENBOX_2
1083:1087
NKENE
APC,CDC20,FZR1
0.9955
More...
Q9UHB9
Signal recognition particle subunit SRP68
DEG_APCC_KENBOX_2
38:42
NKENE
APC,CDC20,FZR1
0.7271
More...
Q9HCK1
DBF4-type zinc finger-containing protein 2
DEG_APCC_KENBOX_2
906:910
NKENE
APC,CDC20,FZR1
0.9736
More...
Q96MH7
Uncharacterized protein C5orf34
DEG_APCC_KENBOX_2
193:197
NKENE
APC,CDC20,FZR1
0.702
More...