DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PITSS
Uniprot ID:
Q52LA3
Source protein:
Protein lin-52 homolog
Source gene:
LIN52
Class:
DEG_SPOP_SBC_1
Location:
49:53
E3 ligase:
SPOP
DEGRON score:
0.9964
ASA_SCORE:
81.92
COIL:
0.9358
CONS_SCORE:
0.3825
DSS_SCORE:
0.3853
HELIX:
0.0408
FCONS_SCORE:
0.7614
RIG_SCORE:
0.6634
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R63C
TCGA-A5-A0G9
UCEC
TCGA
PITSS
DEG_SPOP_SBC_1
0.0556
p.R63C
DO42304
UCEC
ICGC
PITSS
DEG_SPOP_SBC_1
0.0556
p.V39A
TCGA-AM-5821
COAD
TCGA
PITSS
DEG_SPOP_SBC_1
0.0556
p.V39A
DO8240
COAD
ICGC
PITSS
DEG_SPOP_SBC_1
0.0556
p.S48N
TCGA-DU-6407
LGG
TCGA
PITSS
DEG_SPOP_SBC_1
0.75
p.S48N
DO22295
LGG
ICGC
PITSS
DEG_SPOP_SBC_1
0.75
p.R63L
DO228971
LICA
ICGC
PITSS
DEG_SPOP_SBC_1
0.0556
p.V39F
DO229019
LICA
ICGC
PITSS
DEG_SPOP_SBC_1
0.0556
p.A59T
SIDM00150
Colorectal Carcinoma
GDSC
PITSS
DEG_SPOP_SBC_1
0.1667
p.A59T
ACH-000969
Colon/Colorectal Cancer
CCLE
PITSS
DEG_SPOP_SBC_1
0.1667
p.A59T
KM12
large_intestine
COSMIC
PITSS
DEG_SPOP_SBC_1
0.1667
p.S48R
ACH-000725
Breast Cancer
CCLE
PITSS
DEG_SPOP_SBC_1
0.75
Drug responses associated with LIN52 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PITSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P0C7T5
Ataxin-1-like
DEG_SPOP_SBC_1
459:463
PITSS
SPOP
0.9666
More...
P49790
Nuclear pore complex protein Nup153
DEG_SPOP_SBC_1
478:482
PITSS
SPOP
0.9764
More...
P58397
A disintegrin and metalloproteinase with thrombospondin motifs 12
DEG_SPOP_SBC_1
74:78
PITSS
SPOP
0.5535
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
258:262
PITSS
SPOP
0.9141
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1386:1390
PITSS
SPOP
0.7751
More...
Q6EMB2
Tubulin polyglutamylase TTLL5
DEG_SPOP_SBC_1
1269:1273
PITSS
SPOP
0.9014
More...
Q8IXJ9
Polycomb group protein ASXL1
DEG_SPOP_SBC_1
1219:1223
PITSS
SPOP
0.9345
More...
Q8TAM2
Tetratricopeptide repeat protein 8
DEG_SPOP_SBC_1
150:154
PITSS
SPOP
0.9945
More...
Q9H0E3
Histone deacetylase complex subunit SAP130
DEG_SPOP_SBC_1
506:510
PITSS
SPOP
0.6301
More...
Q52LA3
Protein lin-52 homolog
DEG_SPOP_SBC_1
49:53
PITSS
SPOP
0.9964
More...