DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
PPTST
Uniprot ID:
O96018
Source protein:
Amyloid-beta A4 precursor protein-binding family A member 3
Source gene:
APBA3
Class:
DEG_SPOP_SBC_1
Location:
237:241
E3 ligase:
SPOP
DEGRON score:
0.6594
ASA_SCORE:
73.18
COIL:
0.7868
CONS_SCORE:
0.5636
DSS_SCORE:
0.6624
HELIX:
0.1834
FCONS_SCORE:
0.7744
RIG_SCORE:
0.6619
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L231Q
TCGA-3A-A9IR
PAAD
TCGA
PPTST
DEG_SPOP_SBC_1
0.1667
p.L231Q
DO51681
PAAD
ICGC
PPTST
DEG_SPOP_SBC_1
0.1667
p.S233L
TCGA-AX-A1CE
UCEC
TCGA
PPTST
DEG_SPOP_SBC_1
0.6667
p.S233L
DO42280
UCEC
ICGC
PPTST
DEG_SPOP_SBC_1
0.6667
p.R242C
TCGA-B5-A3FC
UCEC
TCGA
PPTST
DEG_SPOP_SBC_1
0.3056
p.R242C
DO41871
UCEC
ICGC
PPTST
DEG_SPOP_SBC_1
0.3056
p.T241M
TCGA-DF-A2KU
UCEC
TCGA
PPTST
DEG_SPOP_SBC_1
0.7423
p.T241M
DO223286
UCEC
ICGC
PPTST
DEG_SPOP_SBC_1
0.7423
p.R242H
DO228581
GACA
ICGC
PPTST
DEG_SPOP_SBC_1
0.3056
p.R247Q
SIDM00264
Ewing's Sarcoma
GDSC
PPTST
DEG_SPOP_SBC_1
0.1667
p.R235W
SIDM00225
Melanoma
GDSC
PPTST
DEG_SPOP_SBC_1
0.2778
p.R235Q
ACH-000068
Lymphoma
CCLE
PPTST
DEG_SPOP_SBC_1
0.2778
Drug responses associated with APBA3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60292
Signal-induced proliferation-associated 1-like protein 3
DEG_SPOP_SBC_1
125:129
PPTST
SPOP
0.9194
More...
O75376
Nuclear receptor corepressor 1
DEG_SPOP_SBC_1
2076:2080
PPTST
SPOP
0.9939
More...
O96018
Amyloid-beta A4 precursor protein-binding family A member 3
DEG_SPOP_SBC_1
237:241
PPTST
SPOP
0.6594
More...
Q00613
Heat shock factor protein 1
DEG_SPOP_SBC_1
365:369
PPTST
SPOP
0.9967
More...
Q02817
Mucin-2
DEG_SPOP_SBC_1
1549:1553
PPTST
SPOP
0.816
More...
Q02817
Mucin-2
DEG_SPOP_SBC_1
1628:1632
PPTST
SPOP
0.7158
More...
Q15648
Mediator of RNA polymerase II transcription subunit 1
DEG_SPOP_SBC_1
1033:1037
PPTST
SPOP
0.9764
More...
Q96D71
RalBP1-associated Eps domain-containing protein 1
DEG_SPOP_SBC_1
237:241
PPTST
SPOP
0.9554
More...
Q9UKZ4
Teneurin-1
DEG_SPOP_SBC_1
234:238
PPTST
SPOP
0.9932
More...
Q9P2V4
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1
DEG_SPOP_SBC_1
348:352
PPTST
SPOP
0.7735
More...
C9JQL5
Putative dispanin subfamily A member 2d
DEG_SPOP_SBC_1
40:44
PPTST
SPOP
0.6181
More...
Q96N23
Cilia- and flagella-associated protein 54
DEG_SPOP_SBC_1
25:29
PPTST
SPOP
0.9906
More...