DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VGTSS
Uniprot ID:
O14497
Source protein:
AT-rich interactive domain-containing protein 1A
Source gene:
ARID1A
Class:
DEG_SPOP_SBC_1
Location:
1082:1086
E3 ligase:
SPOP
DEGRON score:
0.8602
ASA_SCORE:
69.52
COIL:
0.9176
CONS_SCORE:
0.678
DSS_SCORE:
0.2493
HELIX:
0.0492
FCONS_SCORE:
1.0406
RIG_SCORE:
0.7264
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G1083C
TCGA-97-7938
LUAD
TCGA
VGTSS
DEG_SPOP_SBC_1
0.6489
p.G1083C
DO24329
LUAD
ICGC
VGTSS
DEG_SPOP_SBC_1
0.6489
p.S1090I
TCGA-B5-A11E
UCEC
TCGA
VGTSS
DEG_SPOP_SBC_1
0.2222
p.S1090I
DO41644
UCEC
ICGC
VGTSS
DEG_SPOP_SBC_1
0.2222
p.R1074L
TCGA-EE-A2GH
SKCM
TCGA
VGTSS
DEG_SPOP_SBC_1
0.1111
p.R1074L
DO37643
SKCM
ICGC
VGTSS
DEG_SPOP_SBC_1
0.1111
p.A1089T
TCGA-TM-A84M
LGG
TCGA
VGTSS
DEG_SPOP_SBC_1
0.25
p.A1089T
DO50238
LGG
ICGC
VGTSS
DEG_SPOP_SBC_1
0.25
p.R1074W
DO225388
BRCA
ICGC
VGTSS
DEG_SPOP_SBC_1
0.1111
p.L1080I
DO228672
LICA
ICGC
VGTSS
DEG_SPOP_SBC_1
0.2778
p.A1077T
DO228903
LICA
ICGC
VGTSS
DEG_SPOP_SBC_1
0.1944
p.P1072L
SK-MEL-28
skin
COSMIC
VGTSS
DEG_SPOP_SBC_1
0.1667
p.R1079H
CCRF-CEM
haematopoietic_and_lymphoid_tissue
COSMIC
VGTSS
DEG_SPOP_SBC_1
0.25
p.P1073L
SK-MEL-28
skin
COSMIC
VGTSS
DEG_SPOP_SBC_1
0.0833
p.R1080H
CCRF-CEM
haematopoietic_and_lymphoid_tissue
COSMIC
VGTSS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with ARID1A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VGTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A4D161
Protein FAM221A
DEG_SPOP_SBC_1
249:253
VGTSS
SPOP
0.845
More...
O14497
AT-rich interactive domain-containing protein 1A
DEG_SPOP_SBC_1
1082:1086
VGTSS
SPOP
0.8602
More...
O75461
Transcription factor E2F6
DEG_SPOP_SBC_1
251:255
VGTSS
SPOP
0.9975
More...
P08397
Porphobilinogen deaminase
DEG_SPOP_SBC_1
143:147
VGTSS
SPOP
0.5283
More...
P43119
Prostacyclin receptor
DEG_SPOP_SBC_1
371:375
VGTSS
SPOP
0.9613
More...
Q6W4X9
Mucin-6
DEG_SPOP_SBC_1
2159:2163
VGTSS
SPOP
0.9597
More...
Q8NFD5
AT-rich interactive domain-containing protein 1B
DEG_SPOP_SBC_1
1118:1122
VGTSS
SPOP
0.5867
More...
Q8TE68
Epidermal growth factor receptor kinase substrate 8-like protein 1
DEG_SPOP_SBC_1
229:233
VGTSS
SPOP
0.9487
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7482:7486
VGTSS
SPOP
0.9982
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
8061:8065
VGTSS
SPOP
0.9927
More...
Q9C0B0
RING finger protein unkempt homolog
DEG_SPOP_SBC_1
489:493
VGTSS
SPOP
0.9747
More...
Q9NQX0
Putative histone-lysine N-methyltransferase PRDM6
DEG_SPOP_SBC_1
223:227
VGTSS
SPOP
0.9484
More...
P86434
Putative uncharacterized protein ADORA2A-AS1
DEG_SPOP_SBC_1
48:52
VGTSS
SPOP
0.7315
More...