DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VGTSS
Uniprot ID:
Q9NQX0
Source protein:
Putative histone-lysine N-methyltransferase PRDM6
Source gene:
PRDM6
Class:
DEG_SPOP_SBC_1
Location:
223:227
E3 ligase:
SPOP
DEGRON score:
0.9484
ASA_SCORE:
68.92
COIL:
0.8114
CONS_SCORE:
0.5887
DSS_SCORE:
0.4847
HELIX:
0.1538
FCONS_SCORE:
1.0168
RIG_SCORE:
0.6645
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R220H
TCGA-2H-A9GQ
ESCA
TCGA
VGTSS
DEG_SPOP_SBC_1
0.25
p.T225A
DO234376
ESAD
ICGC
VGTSS
DEG_SPOP_SBC_1
0.7139
p.A228T
DO234457
ESAD
ICGC
VGTSS
DEG_SPOP_SBC_1
0.3056
p.P235T
DO229257
THCA
ICGC
VGTSS
DEG_SPOP_SBC_1
0.1111
p.R220L
SIDM00427
Ewing's Sarcoma
GDSC
VGTSS
DEG_SPOP_SBC_1
0.25
p.R220L
SIDM01162
Kidney Carcinoma
GDSC
VGTSS
DEG_SPOP_SBC_1
0.25
p.R220L
ACH-001398
Kidney Cancer
CCLE
VGTSS
DEG_SPOP_SBC_1
0.25
p.P234S
SIDM01087
Melanoma
GDSC
VGTSS
DEG_SPOP_SBC_1
0.1389
p.P234L
ACH-002041
Thyroid Cancer
CCLE
VGTSS
DEG_SPOP_SBC_1
0.1389
Drug responses associated with PRDM6 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VGTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A4D161
Protein FAM221A
DEG_SPOP_SBC_1
249:253
VGTSS
SPOP
0.845
More...
O14497
AT-rich interactive domain-containing protein 1A
DEG_SPOP_SBC_1
1082:1086
VGTSS
SPOP
0.8602
More...
O75461
Transcription factor E2F6
DEG_SPOP_SBC_1
251:255
VGTSS
SPOP
0.9975
More...
P08397
Porphobilinogen deaminase
DEG_SPOP_SBC_1
143:147
VGTSS
SPOP
0.5283
More...
P43119
Prostacyclin receptor
DEG_SPOP_SBC_1
371:375
VGTSS
SPOP
0.9613
More...
Q6W4X9
Mucin-6
DEG_SPOP_SBC_1
2159:2163
VGTSS
SPOP
0.9597
More...
Q8NFD5
AT-rich interactive domain-containing protein 1B
DEG_SPOP_SBC_1
1118:1122
VGTSS
SPOP
0.5867
More...
Q8TE68
Epidermal growth factor receptor kinase substrate 8-like protein 1
DEG_SPOP_SBC_1
229:233
VGTSS
SPOP
0.9487
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7482:7486
VGTSS
SPOP
0.9982
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
8061:8065
VGTSS
SPOP
0.9927
More...
Q9C0B0
RING finger protein unkempt homolog
DEG_SPOP_SBC_1
489:493
VGTSS
SPOP
0.9747
More...
Q9NQX0
Putative histone-lysine N-methyltransferase PRDM6
DEG_SPOP_SBC_1
223:227
VGTSS
SPOP
0.9484
More...
P86434
Putative uncharacterized protein ADORA2A-AS1
DEG_SPOP_SBC_1
48:52
VGTSS
SPOP
0.7315
More...