DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VITSS
Uniprot ID:
O00764
Source protein:
Pyridoxal kinase
Source gene:
PDXK
Class:
DEG_SPOP_SBC_1
Location:
184:188
E3 ligase:
SPOP
DEGRON score:
0.6795
ASA_SCORE:
5.32
COIL:
0.133
CONS_SCORE:
0.5767
DSS_SCORE:
0.55
HELIX:
0.0076
FCONS_SCORE:
1.481
RIG_SCORE:
0.7599
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D181N
TCGA-AP-A0LM
UCEC
TCGA
VITSS
DEG_SPOP_SBC_1
0.25
p.D181N
DO43306
UCEC
ICGC
VITSS
DEG_SPOP_SBC_1
0.25
p.S188F
TCGA-UC-A7PG
CESC
TCGA
VITSS
DEG_SPOP_SBC_1
0.7982
p.T182I
TCGA-XK-AAIW
PRAD
TCGA
VITSS
DEG_SPOP_SBC_1
0.2778
p.T182I
DO51407
PRAD
ICGC
VITSS
DEG_SPOP_SBC_1
0.2778
p.V186L
DO229026
LICA
ICGC
VITSS
DEG_SPOP_SBC_1
0.6765
p.R178H
DO42177
UCEC
ICGC
VITSS
DEG_SPOP_SBC_1
0.1667
p.R178H
SK-UT-1
soft_tissue
COSMIC
VITSS
DEG_SPOP_SBC_1
0.1667
p.V189I
SNU-C2B
large_intestine
COSMIC
VITSS
DEG_SPOP_SBC_1
0.3056
p.R190H
SK-UT-1
soft_tissue
COSMIC
VITSS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with PDXK mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VITSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00764
Pyridoxal kinase
DEG_SPOP_SBC_1
184:188
VITSS
SPOP
0.6795
More...
O75928
E3 SUMO-protein ligase PIAS2
DEG_SPOP_SBC_1
606:610
VITSS
SPOP
0.5785
More...
O95677
Eyes absent homolog 4
DEG_SPOP_SBC_1
124:128
VITSS
SPOP
0.9997
More...
P28324
ETS domain-containing protein Elk-4
DEG_SPOP_SBC_1
332:336
VITSS
SPOP
0.9963
More...
Q6GYQ0
Ral GTPase-activating protein subunit alpha-1
DEG_SPOP_SBC_1
456:460
VITSS
SPOP
0.9959
More...
Q6WRI0
Immunoglobulin superfamily member 10
DEG_SPOP_SBC_1
1176:1180
VITSS
SPOP
0.918
More...
Q8IZD4
mRNA-decapping enzyme 1B
DEG_SPOP_SBC_1
571:575
VITSS
SPOP
0.9737
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
5819:5823
VITSS
SPOP
0.9816
More...
Q9Y467
Sal-like protein 2
DEG_SPOP_SBC_1
444:448
VITSS
SPOP
0.9233
More...