DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VPSTS
Uniprot ID:
O94966
Source protein:
Ubiquitin carboxyl-terminal hydrolase 19
Source gene:
USP19
Class:
DEG_SPOP_SBC_1
Location:
938:942
E3 ligase:
SPOP
DEGRON score:
0.9914
ASA_SCORE:
72.28
COIL:
0.87
CONS_SCORE:
0.2679
DSS_SCORE:
0.5685
HELIX:
0.0528
FCONS_SCORE:
1.0779
RIG_SCORE:
0.6366
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R935Q
TCGA-2W-A8YY
CESC
TCGA
VPSTS
DEG_SPOP_SBC_1
0.25
p.F943L
TCGA-B9-5155
KIRP
TCGA
VPSTS
DEG_SPOP_SBC_1
0.3056
p.Q949K
DO14830
HNSC
ICGC
VPSTS
DEG_SPOP_SBC_1
0.1389
p.D946E
DO229037
LICA
ICGC
VPSTS
DEG_SPOP_SBC_1
0.2222
p.T931A
DO26617
LUSC
ICGC
VPSTS
DEG_SPOP_SBC_1
0.1389
p.T935A
DO35394
PACA
ICGC
VPSTS
DEG_SPOP_SBC_1
0.25
p.P947S
DO37839
SKCM
ICGC
VPSTS
DEG_SPOP_SBC_1
0.1944
p.P947H
DO47613
SKCM
ICGC
VPSTS
DEG_SPOP_SBC_1
0.1944
p.G928V
DO38887
STAD
ICGC
VPSTS
DEG_SPOP_SBC_1
0.0556
p.R945I
DO43306
UCEC
ICGC
VPSTS
DEG_SPOP_SBC_1
0.25
p.E944G
DO43891
UCEC
ICGC
VPSTS
DEG_SPOP_SBC_1
0.2778
p.E944D
KYSE-180
oesophagus
COSMIC
VPSTS
DEG_SPOP_SBC_1
0.2778
p.Y941S
KARPAS-299
haematopoietic_and_lymphoid_tissue
COSMIC
VPSTS
DEG_SPOP_SBC_1
0.712
p.Y943S
KARPAS-299
haematopoietic_and_lymphoid_tissue
COSMIC
VPSTS
DEG_SPOP_SBC_1
0.3056
p.Y931S
KARPAS-299
haematopoietic_and_lymphoid_tissue
COSMIC
VPSTS
DEG_SPOP_SBC_1
0.1389
p.P939S
SNU-407
large_intestine
COSMIC
VPSTS
DEG_SPOP_SBC_1
0.5641
p.P933S
Mewo
skin
COSMIC
VPSTS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with USP19 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O94966
Ubiquitin carboxyl-terminal hydrolase 19
DEG_SPOP_SBC_1
938:942
VPSTS
SPOP
0.9914
More...
O95665
Neurotensin receptor type 2
DEG_SPOP_SBC_1
240:244
VPSTS
SPOP
0.8867
More...
P24386
Rab proteins geranylgeranyltransferase component A 1
DEG_SPOP_SBC_1
188:192
VPSTS
SPOP
0.9827
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4260:4264
VPSTS
SPOP
0.9795
More...
Q5THJ4
Intermembrane lipid transfer protein VPS13D
DEG_SPOP_SBC_1
2123:2127
VPSTS
SPOP
0.9469
More...
Q6VY07
Phosphofurin acidic cluster sorting protein 1
DEG_SPOP_SBC_1
777:781
VPSTS
SPOP
0.9965
More...
Q86WV6
Stimulator of interferon genes protein
DEG_SPOP_SBC_1
351:355
VPSTS
SPOP
0.9975
More...
Q92574
Hamartin
DEG_SPOP_SBC_1
640:644
VPSTS
SPOP
0.9829
More...
Q92772
Cyclin-dependent kinase-like 2
DEG_SPOP_SBC_1
389:393
VPSTS
SPOP
0.9663
More...
Q96PU4
E3 ubiquitin-protein ligase UHRF2
DEG_SPOP_SBC_1
192:196
VPSTS
SPOP
0.993
More...
Q9HCI5
Melanoma-associated antigen E1
DEG_SPOP_SBC_1
159:163
VPSTS
SPOP
0.9657
More...
Q8TBF4
Zinc finger CCHC-type and RNA-binding motif-containing protein 1
DEG_SPOP_SBC_1
191:195
VPSTS
SPOP
0.989
More...
P0C6C1
Ankyrin repeat domain-containing protein 34C
DEG_SPOP_SBC_1
426:430
VPSTS
SPOP
0.9869
More...