DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VPSTS
Uniprot ID:
Q92772
Source protein:
Cyclin-dependent kinase-like 2
Source gene:
CDKL2
Class:
DEG_SPOP_SBC_1
Location:
389:393
E3 ligase:
SPOP
DEGRON score:
0.9663
ASA_SCORE:
77.9
COIL:
0.897
CONS_SCORE:
0.3716
DSS_SCORE:
0.4775
HELIX:
0.0706
FCONS_SCORE:
0.883
RIG_SCORE:
0.6815
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K387T
DO222637
BTCA
ICGC
VPSTS
DEG_SPOP_SBC_1
0.2778
p.H385Y
TCGA-D5-6540
COAD
TCGA
VPSTS
DEG_SPOP_SBC_1
0.2222
p.H385Y
DO9708
COAD
ICGC
VPSTS
DEG_SPOP_SBC_1
0.2222
p.C397Y
SIDM01617
Endometrial Carcinoma
GDSC
VPSTS
DEG_SPOP_SBC_1
0.2222
p.C397Y
ACH-000994
Endometrial/Uterine Cancer
CCLE
VPSTS
DEG_SPOP_SBC_1
0.2222
p.V402M
TCGA-DT-5265
READ
TCGA
VPSTS
DEG_SPOP_SBC_1
0.0833
p.V402M
TCGA-G9-7509
PRAD
TCGA
VPSTS
DEG_SPOP_SBC_1
0.0833
p.V402M
DO51338
PRAD
ICGC
VPSTS
DEG_SPOP_SBC_1
0.0833
p.V402M
DO36499
READ
ICGC
VPSTS
DEG_SPOP_SBC_1
0.0833
p.V402M
SIDM00347
Esophageal Squamous Cell Carcinoma
GDSC
VPSTS
DEG_SPOP_SBC_1
0.0833
p.V402M
SIDM00249
Esophageal Squamous Cell Carcinoma
GDSC
VPSTS
DEG_SPOP_SBC_1
0.0833
p.V402M
SIDM01608
Endometrial Carcinoma
GDSC
VPSTS
DEG_SPOP_SBC_1
0.0833
p.V402M
ACH-000353
Esophageal Cancer
CCLE
VPSTS
DEG_SPOP_SBC_1
0.0833
p.V402M
ACH-000990
Endometrial/Uterine Cancer
CCLE
VPSTS
DEG_SPOP_SBC_1
0.0833
Showing 1 to 14 of 14 entries
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Drug responses associated with CDKL2 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VPSTS
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P0C6C1
Ankyrin repeat domain-containing protein 34C
DEG_SPOP_SBC_1
426:430
VPSTS
SPOP
0.9869
More...
Q92772
Cyclin-dependent kinase-like 2
DEG_SPOP_SBC_1
389:393
VPSTS
SPOP
0.9663
More...
Q96PU4
E3 ubiquitin-protein ligase UHRF2
DEG_SPOP_SBC_1
192:196
VPSTS
SPOP
0.993
More...
Q92574
Hamartin
DEG_SPOP_SBC_1
640:644
VPSTS
SPOP
0.9829
More...
Q5THJ4
Intermembrane lipid transfer protein VPS13D
DEG_SPOP_SBC_1
2123:2127
VPSTS
SPOP
0.9469
More...
Q9HCI5
Melanoma-associated antigen E1
DEG_SPOP_SBC_1
159:163
VPSTS
SPOP
0.9657
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4260:4264
VPSTS
SPOP
0.9795
More...
O95665
Neurotensin receptor type 2
DEG_SPOP_SBC_1
240:244
VPSTS
SPOP
0.8867
More...
Q6VY07
Phosphofurin acidic cluster sorting protein 1
DEG_SPOP_SBC_1
777:781
VPSTS
SPOP
0.9965
More...
P24386
Rab proteins geranylgeranyltransferase component A 1
DEG_SPOP_SBC_1
188:192
VPSTS
SPOP
0.9827
More...
Q86WV6
Stimulator of interferon genes protein
DEG_SPOP_SBC_1
351:355
VPSTS
SPOP
0.9975
More...
O94966
Ubiquitin carboxyl-terminal hydrolase 19
DEG_SPOP_SBC_1
938:942
VPSTS
SPOP
0.9914
More...
Q8TBF4
Zinc finger CCHC-type and RNA-binding motif-containing protein 1
DEG_SPOP_SBC_1
191:195
VPSTS
SPOP
0.989
More...
Showing 1 to 13 of 13 entries
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