DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
VPSTS
Uniprot ID:
Q6VY07
Source protein:
Phosphofurin acidic cluster sorting protein 1
Source gene:
PACS1
Class:
DEG_SPOP_SBC_1
Location:
777:781
E3 ligase:
SPOP
DEGRON score:
0.9965
ASA_SCORE:
80.6
COIL:
0.9672
CONS_SCORE:
0.3057
DSS_SCORE:
0.6236
HELIX:
0.0076
FCONS_SCORE:
0.8775
RIG_SCORE:
0.5958
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R790Q
TCGA-A8-A06Q
BRCA
TCGA
VPSTS
DEG_SPOP_SBC_1
0.0833
p.G767W
TCGA-D1-A174
UCEC
TCGA
VPSTS
DEG_SPOP_SBC_1
0.0556
p.P771S
TCGA-EE-A2M5
SKCM
TCGA
VPSTS
DEG_SPOP_SBC_1
0.1667
p.P778S
SIDM00153
T-Lymphoblastic Leukemia
GDSC
VPSTS
DEG_SPOP_SBC_1
0.5641
p.P778S
ACH-000964
Leukemia
CCLE
VPSTS
DEG_SPOP_SBC_1
0.5641
p.T776S
ACH-000533
Rhabdoid
CCLE
VPSTS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with PACS1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O94966
Ubiquitin carboxyl-terminal hydrolase 19
DEG_SPOP_SBC_1
938:942
VPSTS
SPOP
0.9914
More...
O95665
Neurotensin receptor type 2
DEG_SPOP_SBC_1
240:244
VPSTS
SPOP
0.8867
More...
P24386
Rab proteins geranylgeranyltransferase component A 1
DEG_SPOP_SBC_1
188:192
VPSTS
SPOP
0.9827
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
4260:4264
VPSTS
SPOP
0.9795
More...
Q5THJ4
Intermembrane lipid transfer protein VPS13D
DEG_SPOP_SBC_1
2123:2127
VPSTS
SPOP
0.9469
More...
Q6VY07
Phosphofurin acidic cluster sorting protein 1
DEG_SPOP_SBC_1
777:781
VPSTS
SPOP
0.9965
More...
Q86WV6
Stimulator of interferon genes protein
DEG_SPOP_SBC_1
351:355
VPSTS
SPOP
0.9975
More...
Q92574
Hamartin
DEG_SPOP_SBC_1
640:644
VPSTS
SPOP
0.9829
More...
Q92772
Cyclin-dependent kinase-like 2
DEG_SPOP_SBC_1
389:393
VPSTS
SPOP
0.9663
More...
Q96PU4
E3 ubiquitin-protein ligase UHRF2
DEG_SPOP_SBC_1
192:196
VPSTS
SPOP
0.993
More...
Q9HCI5
Melanoma-associated antigen E1
DEG_SPOP_SBC_1
159:163
VPSTS
SPOP
0.9657
More...
Q8TBF4
Zinc finger CCHC-type and RNA-binding motif-containing protein 1
DEG_SPOP_SBC_1
191:195
VPSTS
SPOP
0.989
More...
P0C6C1
Ankyrin repeat domain-containing protein 34C
DEG_SPOP_SBC_1
426:430
VPSTS
SPOP
0.9869
More...