DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VRTSS
Uniprot ID:
Q13439
Source protein:
Golgin subfamily A member 4
Source gene:
GOLGA4
Class:
DEG_SPOP_SBC_1
Location:
94:98
E3 ligase:
SPOP
DEGRON score:
0.9897
ASA_SCORE:
92.88
COIL:
0.7032
CONS_SCORE:
0.6741
DSS_SCORE:
0.432
HELIX:
0.2574
FCONS_SCORE:
1.0481
RIG_SCORE:
0.6881
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V94M
TCGA-AP-A059
UCEC
TCGA
VRTSS
DEG_SPOP_SBC_1
0.7208
p.R108W
TCGA-AP-A059
UCEC
TCGA
VRTSS
DEG_SPOP_SBC_1
0.0556
p.D108H
DO51884
BLCA
ICGC
VRTSS
DEG_SPOP_SBC_1
0.0556
p.V94L
DO222404
BTCA
ICGC
VRTSS
DEG_SPOP_SBC_1
0.6765
p.S87F
DO51642
CESC
ICGC
VRTSS
DEG_SPOP_SBC_1
0.5833
p.R95Q
DO7855
COAD
ICGC
VRTSS
DEG_SPOP_SBC_1
0.6218
p.R95Q
DO42793
UCEC
ICGC
VRTSS
DEG_SPOP_SBC_1
0.6218
p.R95L
DO229041
LICA
ICGC
VRTSS
DEG_SPOP_SBC_1
0.7316
p.S92C
DO41193
UCEC
ICGC
VRTSS
DEG_SPOP_SBC_1
0.7222
p.R86W
DO41361
UCEC
ICGC
VRTSS
DEG_SPOP_SBC_1
0.1111
p.S98Y
K-562
haematopoietic_and_lymphoid_tissue
COSMIC
VRTSS
DEG_SPOP_SBC_1
0.8231
p.R93H
LoVo
large_intestine
COSMIC
VRTSS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with GOLGA4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13439
Golgin subfamily A member 4
DEG_SPOP_SBC_1
94:98
VRTSS
SPOP
0.9897
More...
Q7Z6G8
Ankyrin repeat and sterile alpha motif domain-containing protein 1B
DEG_SPOP_SBC_1
376:380
VRTSS
SPOP
0.996
More...
Q8TDG4
Helicase POLQ-like
DEG_SPOP_SBC_1
253:257
VRTSS
SPOP
0.5893
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
9817:9821
VRTSS
SPOP
0.8575
More...
Q8WY36
HMG box transcription factor BBX
DEG_SPOP_SBC_1
511:515
VRTSS
SPOP
0.9823
More...
Q9BY84
Dual specificity protein phosphatase 16
DEG_SPOP_SBC_1
487:491
VRTSS
SPOP
0.7285
More...
Q8TE59
A disintegrin and metalloproteinase with thrombospondin motifs 19
DEG_SPOP_SBC_1
702:706
VRTSS
SPOP
0.6468
More...
Q5T0Z8
Uncharacterized protein C6orf132
DEG_SPOP_SBC_1
310:314
VRTSS
SPOP
0.9965
More...
Q86VQ1
Glucocorticoid-induced transcript 1 protein
DEG_SPOP_SBC_1
161:165
VRTSS
SPOP
0.7782
More...