DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VRTSS
Uniprot ID:
Q8WY36
Source protein:
HMG box transcription factor BBX
Source gene:
BBX
Class:
DEG_SPOP_SBC_1
Location:
511:515
E3 ligase:
SPOP
DEGRON score:
0.9823
ASA_SCORE:
92.06
COIL:
0.8224
CONS_SCORE:
0.3494
DSS_SCORE:
0.6101
HELIX:
0.0556
FCONS_SCORE:
1.0309
RIG_SCORE:
0.6724
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R512C
TCGA-59-2349
OV
TCGA
VRTSS
DEG_SPOP_SBC_1
0.719
p.R512C
DO28621
OV
ICGC
VRTSS
DEG_SPOP_SBC_1
0.719
p.R512C
SIDM00392
Melanoma
GDSC
VRTSS
DEG_SPOP_SBC_1
0.719
p.R512C
ACH-000810
Skin Cancer
CCLE
VRTSS
DEG_SPOP_SBC_1
0.719
p.R512C
SK-MEL-30
skin
COSMIC
VRTSS
DEG_SPOP_SBC_1
0.719
p.S516C
TCGA-86-8585
LUAD
TCGA
VRTSS
DEG_SPOP_SBC_1
0.3056
p.S516C
DO24850
LUAD
ICGC
VRTSS
DEG_SPOP_SBC_1
0.3056
p.S516N
TCGA-86-8585
LUAD
TCGA
VRTSS
DEG_SPOP_SBC_1
0.3056
p.S516N
DO24850
LUAD
ICGC
VRTSS
DEG_SPOP_SBC_1
0.3056
p.E501Q
TCGA-BA-4077
HNSC
TCGA
VRTSS
DEG_SPOP_SBC_1
0.0556
p.E501Q
DO1146
BRCA
ICGC
VRTSS
DEG_SPOP_SBC_1
0.0556
p.E501Q
DO15647
HNSC
ICGC
VRTSS
DEG_SPOP_SBC_1
0.0556
p.D505H
TCGA-BA-4077
HNSC
TCGA
VRTSS
DEG_SPOP_SBC_1
0.1667
p.D505H
DO15647
HNSC
ICGC
VRTSS
DEG_SPOP_SBC_1
0.1667
p.L522F
TCGA-BA-4077
HNSC
TCGA
VRTSS
DEG_SPOP_SBC_1
0.1389
p.L522F
DO15647
HNSC
ICGC
VRTSS
DEG_SPOP_SBC_1
0.1389
p.P507S
TCGA-FR-A726
SKCM
TCGA
VRTSS
DEG_SPOP_SBC_1
0.2222
p.P507S
DO48665
SKCM
ICGC
VRTSS
DEG_SPOP_SBC_1
0.2222
p.G506E
DO22295
LGG
ICGC
VRTSS
DEG_SPOP_SBC_1
0.6389
p.G506E
ACH-000786
Lymphoma
CCLE
VRTSS
DEG_SPOP_SBC_1
0.6389
p.Y507C
DO44714
LICA
ICGC
VRTSS
DEG_SPOP_SBC_1
0.2222
p.K525N
SIDM02039
Colorectal Carcinoma
GDSC
VRTSS
DEG_SPOP_SBC_1
0.1667
p.R508C
SIDM00290
Gastric Carcinoma
GDSC
VRTSS
DEG_SPOP_SBC_1
0.25
p.R508C
ACH-000847
Gastric Cancer
CCLE
VRTSS
DEG_SPOP_SBC_1
0.25
p.R508C
HGC-27
stomach
COSMIC
VRTSS
DEG_SPOP_SBC_1
0.25
p.Q502L
ACH-000786
Lymphoma
CCLE
VRTSS
DEG_SPOP_SBC_1
0.5278
p.E511G
ACH-000985
Colon/Colorectal Cancer
CCLE
VRTSS
DEG_SPOP_SBC_1
0.7199
p.E511G
LS-411N
large_intestine
COSMIC
VRTSS
DEG_SPOP_SBC_1
0.7199
p.A505V
ACH-001517
Endometrial/Uterine Cancer
CCLE
VRTSS
DEG_SPOP_SBC_1
0.1667
p.A505V
HEC-1
endometrium
COSMIC
VRTSS
DEG_SPOP_SBC_1
0.1667
p.M515R
KCL-22
haematopoietic_and_lymphoid_tissue
COSMIC
VRTSS
DEG_SPOP_SBC_1
0.8632
Drug responses associated with BBX mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13439
Golgin subfamily A member 4
DEG_SPOP_SBC_1
94:98
VRTSS
SPOP
0.9897
More...
Q7Z6G8
Ankyrin repeat and sterile alpha motif domain-containing protein 1B
DEG_SPOP_SBC_1
376:380
VRTSS
SPOP
0.996
More...
Q8TDG4
Helicase POLQ-like
DEG_SPOP_SBC_1
253:257
VRTSS
SPOP
0.5893
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
9817:9821
VRTSS
SPOP
0.8575
More...
Q8WY36
HMG box transcription factor BBX
DEG_SPOP_SBC_1
511:515
VRTSS
SPOP
0.9823
More...
Q9BY84
Dual specificity protein phosphatase 16
DEG_SPOP_SBC_1
487:491
VRTSS
SPOP
0.7285
More...
Q8TE59
A disintegrin and metalloproteinase with thrombospondin motifs 19
DEG_SPOP_SBC_1
702:706
VRTSS
SPOP
0.6468
More...
Q5T0Z8
Uncharacterized protein C6orf132
DEG_SPOP_SBC_1
310:314
VRTSS
SPOP
0.9965
More...
Q86VQ1
Glucocorticoid-induced transcript 1 protein
DEG_SPOP_SBC_1
161:165
VRTSS
SPOP
0.7782
More...