Gene set: GSMA_I

     Gene set description
  • Gene set name: GSMA_I
  • Method: genome scan meta-analysis
  • Number of genes: 2155
  • Reference: Lewis et al. (2003) Genome Scan Meta-Analysis of Schizophrenia and Bipolar Disorder, Part II: Schizophrenia. The American Journal of Human Genetics 73(1): 34 - 48 PubMed
  • Gene set summary: The GSMA_I gene set includes 2158 genes from 12 bins having both PAvgRnk and Pord <0.05 in Lewis et al. (2003) genome scan meta-analysis.
     Gene List

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Gene ID Symbol Official Full Name Start Site End Site Location
81839VANGL1vang-like 1 (van gogh, Drosophila)1159860971160423681p11-p13.1
6913TBX15T-box 151192271891193337021p11.1
2210FCGR1BFc fragment of IgG, high affinity Ib, receptor (CD64)1207286571207374171p11.2
54855FAM46Cfamily with sequence similarity 46, member C1179501271179725341p12
653820FAM72Bfamily with sequence similarity 72, member B1206405281206572041p12
54834GDAP2ganglioside induced differentiation associated protein 21182135601182737291p12
343505NBPF7neuroblastoma breakpoint family, member 71201789111201893021p12
26227PHGDHphosphoglycerate dehydrogenase1200560331200883611p12
6566SLC16A1solute carrier family 16, member 1 (monocarboxylic acid transporter 1)1132559921133004981p12
200162SPAG17sperm associated antigen 171182978111185293571p12
90874ZNF697zinc finger protein 6971199635231199919131p12
4808NHLH2nescient helix loop helix 21161805211161852701p12-p11
260425MAGI3membrane associated guanylate kinase, WW and PDZ domain containing 31137349981140300681p12-p11.2
270AMPD1adenosine monophosphate deaminase 1 (isoform M)1150172451150396991p13
914CD2CD2 molecule1170986091171133741p13
963CD53CD53 molecule1112153441112440811p13
965CD58CD58 molecule1168586801169151261p13
9398IGSF2immunoglobulin superfamily, member 21173459051173806901p13
3321IGSF3immunoglobulin superfamily, member 31169185541170118371p13
3737KCNA2potassium voltage-gated channel, shaker-related subfamily, member 21109472991109498681p13
10905MAN1A2mannosidase, alpha, class 1A, member 21177116081178698431p13
5016OVGP1oviductal glycoprotein 1, 120kDa1117584601117719221p13
10745PHTF1putative homeodomain transcription factor 11140413601141028791p13
64783RBM15RNA binding motif protein 151106834681106908261p13
7252TSHBthyroid stimulating hormone, beta1153739381153784641p13
7482WNT2Bwingless-type MMTV integration site family, member 2B1128115631128654281p13
11085ADAM30ADAM metallopeptidase domain 301202376791202406361p13-p11
4853NOTCH2Notch homolog 2 (Drosophila)1202556991204137991p13-p11
3158HMGCS23-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial)1200925251201130411p13-p12
6847SYCP1synaptonemal complex protein 11151989781153395141p13-p12
10885WDR3WD repeat domain 31182739141183045721p13-p12
126868C1orf161chromosome 1 open reading frame 1611164558991164793841p13.1
3283HSD3B1hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 11198513491198592041p13.1
3284HSD3B2hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 21197592961197671741p13.1
3744KCNA10potassium voltage-gated channel, shaker-related subfamily, member 101108613621108633201p13.1
9860LRIG2leucine-rich repeats and immunoglobulin-like domains 21134173541134688651p13.1
5738PTGFRNprostaglandin F2 receptor negative regulator1172542121173344951p13.1
389RHOCras homolog gene family, member C1130452721130515481p13.1
55356SLC22A15solute carrier family 22, member 151163206421164135481p13.1
51592TRIM33tripartite motif-containing 331147369221148553041p13.1
80263TRIM45tripartite motif-containing 451174552101174659341p13.1
79679VTCN1V-set domain containing T cell activation inhibitor 11174877321175550721p13.1
83998REG4regenerating islet-derived family, member 41201382311201557261p13.1-p12
27159CHIAchitinase, acidic1116350071116647081p13.1-p21.3
140ADORA3adenosine A3 receptor1118274931119081201p13.2
10768AHCYL1S-adenosylhomocysteine hydrolase-like 11103288311103678871p13.2
10717AP4B1adaptor-related protein complex 4, beta 1 subunit1142392011142492151p13.2
515ATP5F1ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B11117932661118060631p13.2
440603BCL2L15BCL2-like 151142209591142316921p13.2
128346C1orf162chromosome 1 open reading frame 1621118181271118226571p13.2
55924C1orf183chromosome 1 open reading frame 1831120698931120999421p13.2
128344C1orf88chromosome 1 open reading frame 881116907711116971581p13.2
829CAPZA1capping protein (actin filament) muscle Z-line, alpha 11129635981130157641p13.2
55917CTTNBP2NLCTTNBP2 N-terminal like1127403831128037391p13.2
64858DCLRE1BDNA cross-link repair 1B (PSO2 homolog, S. cerevisiae)1142495611142582171p13.2
163259DENND2CDENN/MADD domain containing 2C1149287191150142551p13.2
284467FAM19A3family with sequence similarity 19 (chemokine (C-C motif)-like), member A31130647121130713801p13.2
204851HIPK1homeodomain interacting protein kinase 11142735191143219451p13.2
4343MOV10Mov10, Moloney leukemia virus 10, homolog (mouse)1130189901130448841p13.2
4893NRASneuroblastoma RAS viral (v-ras) oncogene homolog1150511081150610381p13.2
56944OLFML3olfactomedin-like 31143235531143263981p13.2
333926PPM1Jprotein phosphatase 1J (PP2C domain containing)1130541391130594731p13.2
54665RSBN1round spermatid basic protein 11141059771141565931p13.2
54879ST7Lsuppression of tumorigenicity 7 like1128676631129635631p13.2
148281SYT6synaptotagmin VI1144334371144979951p13.2
10100TSPAN2tetraspanin 21153921551154336381p13.2
79084WDR77WD repeat domain 771117840351117933531p13.2
257ALX3ALX homeobox 31104045201104148451p13.3
55791C1orf103chromosome 1 open reading frame 1031112913351113080891p13.3
10390CEPT1choline/ethanolamine phosphotransferase 11114837721115292471p13.3
1117CHI3L2chitinase 3-like 21115718041115875851p13.3
79961DENND2DDENN/MADD domain containing 2D1115313241115448041p13.3
85369FAM40Afamily with sequence similarity 40, member A1103787641103987861p13.3
10542HBXIPhepatitis B virus x interacting protein1107453981107520691p13.3
3738KCNA3potassium voltage-gated channel, shaker-related subfamily, member 31110158331110191781p13.3
3752KCND3potassium voltage-gated channel, Shal-related subfamily, member 31121199771123333001p13.3
5906RAP1ARAP1A, member of RAS oncogene family1119639281120576241p13.3
9122SLC16A4solute carrier family 16, member 4 (monocarboxylic acid transporter 5)1107070281107351591p13.3
388662SLC6A17solute carrier family 6, member 171104946311105463471p13.3
128338TMEM77transmembrane protein 771114614811114842381p13.3
164153UBL4Bubiquitin-like 4B1104565851104580921p13.3
845CASQ2calsequestrin 2 (cardiac muscle)1160441471161129291p13.3-p11
51179HAO2hydroxyacid oxidase 2 (long chain)1197129251197382741p13.3-p13.1
26191PTPN22protein tyrosine phosphatase, non-receptor type 22 (lymphoid)1141579601142158571p13.3-p13.1
10352WARS2tryptophanyl tRNA synthetase 2, mitochondrial1193753621194848181p13.3-p13.1
476ATP1A1ATPase, Na+/K+ transporting, alpha 1 polypeptide1167173591167489191p21
3749KCNC4potassium voltage-gated channel, Shaw-related subfamily, member 41105555881105781891p21
84432PROK1prokineticin 11107953111108014991p21
1435CSF1colony stimulating factor 1 (macrophage)1102549801102738781p21-p13
10286BCAS2breast carcinoma amplified sequence 21149117011149257881p21-p13.3
11218DDX20DEAD (Asp-Glu-Ala-Asp) box polypeptide 201120997771121117221p21.1-p13.2
7812CSDE1cold shock domain containing E1, RNA-binding1150610601151021471p22
8458TTF2transcription termination factor, RNA polymerase II1174044721174470151p22
51107APH1Aanterior pharynx defective 1 homolog A (C. elegans)1485044231485081561p36.13-q31.3
51027BOLA1bolA homolog 1 (E. coli)1481378251481389691p36.13-q31.3
9557CHD1Lchromodomain helicase DNA binding protein 1-like1451809151452340671q12
9659PDE4DIPphosphodiesterase 4D interacting protein1435627841437874361q12
11243PMF1polyamine-modulated factor 11544494081544764571q12
9939RBM8ARNA binding motif protein 8A1442189951442228011q12
29765TMOD4tropomodulin 4 (muscle)1494090871494151711q12

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