DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
AVSST
Uniprot ID:
Q7Z5N4
Source protein:
Protein sidekick-1
Source gene:
SDK1
Class:
DEG_SPOP_SBC_1
Location:
1287:1291
E3 ligase:
SPOP
DEGRON score:
0.6155
ASA_SCORE:
49.24
COIL:
0.5484
CONS_SCORE:
0.4528
DSS_SCORE:
0.2767
HELIX:
0.0122
FCONS_SCORE:
0.9256
RIG_SCORE:
0.7705
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V1300M
DO224689
COCA
ICGC
AVSST
DEG_SPOP_SBC_1
0.0833
p.E1286D
SIDM02063
Colorectal Carcinoma
GDSC
AVSST
DEG_SPOP_SBC_1
0.3056
p.T1298S
SIDM01162
Kidney Carcinoma
GDSC
AVSST
DEG_SPOP_SBC_1
0.1389
p.T1298S
ACH-001398
Kidney Cancer
CCLE
AVSST
DEG_SPOP_SBC_1
0.1389
p.T1298S
SW156
kidney
COSMIC
AVSST
DEG_SPOP_SBC_1
0.1389
Drug responses associated with SDK1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of AVSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P10070
Zinc finger protein GLI2
DEG_SPOP_SBC_1
361:365
AVSST
SPOP
0.9871
More...
P10071
Transcriptional activator GLI3
DEG_SPOP_SBC_1
422:426
AVSST
SPOP
0.971
More...
P10914
Interferon regulatory factor 1
DEG_SPOP_SBC_1
187:191
AVSST
SPOP
0.9982
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1756:1760
AVSST
SPOP
0.8694
More...
Q15052
Rho guanine nucleotide exchange factor 6
DEG_SPOP_SBC_1
138:142
AVSST
SPOP
0.9973
More...
Q6AI39
BRD4-interacting chromatin-remodeling complex-associated protein-like
DEG_SPOP_SBC_1
377:381
AVSST
SPOP
0.9866
More...
Q7Z5N4
Protein sidekick-1
DEG_SPOP_SBC_1
1287:1291
AVSST
SPOP
0.6155
More...
Q92547
DNA topoisomerase 2-binding protein 1
DEG_SPOP_SBC_1
1017:1021
AVSST
SPOP
0.9996
More...
Q9BX66
Sorbin and SH3 domain-containing protein 1
DEG_SPOP_SBC_1
266:270
AVSST
SPOP
0.99
More...
Q9GZV5
WW domain-containing transcription regulator protein 1
DEG_SPOP_SBC_1
171:175
AVSST
SPOP
0.9911
More...