DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PGTTT
Uniprot ID:
O75150
Source protein:
E3 ubiquitin-protein ligase BRE1B
Source gene:
RNF40
Class:
DEG_SPOP_SBC_1
Location:
568:572
E3 ligase:
SPOP
DEGRON score:
0.8754
ASA_SCORE:
84.68
COIL:
0.8938
CONS_SCORE:
0.2865
DSS_SCORE:
0.7005
HELIX:
0.062
FCONS_SCORE:
0.9723
RIG_SCORE:
0.6352
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R561T
TCGA-IR-A3LK
CESC
TCGA
PGTTT
DEG_SPOP_SBC_1
0.1389
p.R561T
DO44299
CESC
ICGC
PGTTT
DEG_SPOP_SBC_1
0.1389
p.P566A
TCGA-ZF-A9R0
BLCA
TCGA
PGTTT
DEG_SPOP_SBC_1
0.2778
p.P566A
DO219055
BLCA
ICGC
PGTTT
DEG_SPOP_SBC_1
0.2778
p.T572A
DO233205
GACA
ICGC
PGTTT
DEG_SPOP_SBC_1
0.7139
p.E573V
ACH-000574
Ovarian Cancer
CCLE
PGTTT
DEG_SPOP_SBC_1
0.3056
p.E573V
FU-OV-1
ovary
COSMIC
PGTTT
DEG_SPOP_SBC_1
0.3056
p.R562L
ACH-000868
Lung Cancer
CCLE
PGTTT
DEG_SPOP_SBC_1
0.2778
p.S581N
ACH-000921
Lung Cancer
CCLE
PGTTT
DEG_SPOP_SBC_1
0.0833
Drug responses associated with RNF40 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PGTTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O00592
Podocalyxin
DEG_SPOP_SBC_1
90:94
PGTTT
SPOP
0.9852
More...
O15054
Lysine-specific demethylase 6B
DEG_SPOP_SBC_1
394:398
PGTTT
SPOP
0.9903
More...
O75150
E3 ubiquitin-protein ligase BRE1B
DEG_SPOP_SBC_1
568:572
PGTTT
SPOP
0.8754
More...
P51610
Host cell factor 1
DEG_SPOP_SBC_1
584:588
PGTTT
SPOP
0.6872
More...
P51610
Host cell factor 1
DEG_SPOP_SBC_1
763:767
PGTTT
SPOP
0.9496
More...
Q13642
Four and a half LIM domains protein 1
DEG_SPOP_SBC_1
311:315
PGTTT
SPOP
0.8812
More...
Q5SQI0
Alpha-tubulin N-acetyltransferase 1
DEG_SPOP_SBC_1
29:33
PGTTT
SPOP
0.5329
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
1498:1502
PGTTT
SPOP
0.9082
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2268:2272
PGTTT
SPOP
0.9849
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
2825:2829
PGTTT
SPOP
0.8413
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3525:3529
PGTTT
SPOP
0.9452
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4082:4086
PGTTT
SPOP
0.9542
More...
Q96MZ4
Protein FAM218A
DEG_SPOP_SBC_1
63:67
PGTTT
SPOP
0.8498
More...