DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PPFY
Uniprot ID:
Q6ZN30
Source protein:
Zinc finger protein basonuclin-2
Source gene:
BNC2
Class:
ITCH
Location:
570:573
E3 ligase:
ITCH,NEDD4
DEGRON score:
0.7924
ASA_SCORE:
90.05
COIL:
0.835
CONS_SCORE:
0.374
DSS_SCORE:
0.3601
HELIX:
0.1348
FCONS_SCORE:
0.8102
RIG_SCORE:
0.7875
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S575R
TCGA-17-Z028
LUAD
TCGA
PPFY
ITCH
0.2778
p.S575R
TCGA-AA-3975
COAD
TCGA
PPFY
ITCH
0.2778
p.S575R
TCGA-CD-8524
STAD
TCGA
PPFY
ITCH
0.2778
p.S575R
TCGA-CD-A48C
STAD
TCGA
PPFY
ITCH
0.2778
p.S575R
TCGA-D7-6525
STAD
TCGA
PPFY
ITCH
0.2778
p.S575R
SIDM01296
Esophageal Carcinoma
GDSC
PPFY
ITCH
0.2778
p.S575I
TCGA-BR-8370
STAD
TCGA
PPFY
ITCH
0.2778
p.E581K
TCGA-D3-A2JF
SKCM
TCGA
PPFY
ITCH
0.1111
p.R574G
TCGA-EL-A3ZR
THCA
TCGA
PPFY
ITCH
0.3056
p.D563N
DO5200
BRCA
ICGC
PPFY
ITCH
0.1389
p.E561K
DO49976
CESC
ICGC
PPFY
ITCH
0.5278
p.C581Y
DO233930
GACA
ICGC
PPFY
ITCH
0.1111
p.P565T
DO23891
LUAD
ICGC
PPFY
ITCH
0.1944
p.A570T
DO232224
PBCA
ICGC
PPFY
ITCH
0.7139
p.D562Y
DO41758
UCEC
ICGC
PPFY
ITCH
0.1111
p.S561C
SIDM01108
Non-Small Cell Lung Carcinoma
GDSC
PPFY
ITCH
0.5278
p.S561C
ACH-000309
Lung Cancer
CCLE
PPFY
ITCH
0.5278
p.S561C
SK-LU-1
lung
COSMIC
PPFY
ITCH
0.5278
p.A561E
SNU-182
liver
COSMIC
PPFY
ITCH
0.5278
p.D567G
EN
endometrium
COSMIC
PPFY
ITCH
0.25
p.G566E
SUP-HD1
haematopoietic_and_lymphoid_tissue
COSMIC
PPFY
ITCH
0.2222
p.H569Q
TT2609-C02
thyroid
COSMIC
PPFY
ITCH
0.3056
p.V573L
MDA-MB-175-VII
breast
COSMIC
PPFY
ITCH
0.6765
Drug responses associated with BNC2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPFY
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P17643
5,6-dihydroxyindole-2-carboxylic acid oxidase
ITCH
345:348
PPFY
ITCH,NEDD4
0.695
More...
P18583
Protein SON
ITCH
2136:2139
PPFY
ITCH,NEDD4
0.9982
More...
P78563
Double-stranded RNA-specific editase 1
ITCH
188:191
PPFY
ITCH,NEDD4
0.9978
More...
Q16644
MAP kinase-activated protein kinase 3
ITCH
240:243
PPFY
ITCH,NEDD4
0.6619
More...
Q5TBA9
Protein furry homolog
ITCH
1514:1517
PPFY
ITCH,NEDD4
0.7858
More...
Q5VTD9
Zinc finger protein Gfi-1b
ITCH
99:102
PPFY
ITCH,NEDD4
0.9889
More...
Q5VYJ5
MAM and LDL-receptor class A domain-containing protein 1
ITCH
103:106
PPFY
ITCH,NEDD4
0.6037
More...
Q6ZN30
Zinc finger protein basonuclin-2
ITCH
570:573
PPFY
ITCH,NEDD4
0.7924
More...
Q8IW41
MAP kinase-activated protein kinase 5
ITCH
239:242
PPFY
ITCH,NEDD4
0.887
More...
Q9UPX0
Protein turtle homolog B
ITCH
981:984
PPFY
ITCH,NEDD4
0.9332
More...
Q6ZTI6
Refilin-A
ITCH
38:41
PPFY
ITCH,NEDD4
0.9921
More...
Q7Z2T5
TRMT1-like protein
ITCH
632:635
PPFY
ITCH,NEDD4
0.8239
More...
A4D0V7
Cadherin-like and PC-esterase domain-containing protein 1
ITCH
104:107
PPFY
ITCH,NEDD4
0.9116
More...
Q8NDH2
Leucine-rich repeat transmembrane protein CCDC168
ITCH
4949:4952
PPFY
ITCH,NEDD4
0.8101
More...