DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PVSTS
Uniprot ID:
P07333
Source protein:
Macrophage colony-stimulating factor 1 receptor
Source gene:
CSF1R
Class:
DEG_SPOP_SBC_1
Location:
728:732
E3 ligase:
SPOP
DEGRON score:
0.9843
ASA_SCORE:
80.32
COIL:
0.8772
CONS_SCORE:
0.4564
DSS_SCORE:
0.5257
HELIX:
0.0338
FCONS_SCORE:
1.0389
RIG_SCORE:
0.6559
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P728H
TCGA-AX-A1CE
UCEC
TCGA
PVSTS
DEG_SPOP_SBC_1
0.7694
p.P728H
DO42280
UCEC
ICGC
PVSTS
DEG_SPOP_SBC_1
0.7694
p.T731N
TCGA-55-7994
LUAD
TCGA
PVSTS
DEG_SPOP_SBC_1
0.7055
p.T731N
DO45311
LUAD
ICGC
PVSTS
DEG_SPOP_SBC_1
0.7055
p.T731S
DO229446
SKCA
ICGC
PVSTS
DEG_SPOP_SBC_1
0.6005
p.R727K
ACH-001232
Brain Cancer
CCLE
PVSTS
DEG_SPOP_SBC_1
0.3056
p.M726I
TCGA-BT-A20T
BLCA
TCGA
PVSTS
DEG_SPOP_SBC_1
0.2778
p.M726I
DO804
BLCA
ICGC
PVSTS
DEG_SPOP_SBC_1
0.2778
p.M726I
SIDM00114
Non-Small Cell Lung Carcinoma
GDSC
PVSTS
DEG_SPOP_SBC_1
0.2778
p.M726I
H513
pleura
COSMIC
PVSTS
DEG_SPOP_SBC_1
0.2778
p.M726V
DO232761
PBCA
ICGC
PVSTS
DEG_SPOP_SBC_1
0.2778
p.E725D
DO233506
PRAD
ICGC
PVSTS
DEG_SPOP_SBC_1
0.25
p.D721N
DO222710
MELA
ICGC
PVSTS
DEG_SPOP_SBC_1
0.1389
p.L742M
ACH-001441
Eye Cancer
CCLE
PVSTS
DEG_SPOP_SBC_1
0.0556
Showing 1 to 14 of 14 entries
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Drug responses associated with CSF1R mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
SIDM01007
ALL|lymphoblastic_leukemia
p.E920D (No)
GDSC
Sunitinib
2.0565
SIDM01007
ALL|lymphoblastic_leukemia
p.E920D (No)
GDSC
GW-2580
122.3043
SIDM01007
ALL|lymphoblastic_leukemia
p.E920D (No)
GDSC
Pazopanib
9.0608
SIDM01007
ALL|lymphoblastic_leukemia
p.E920D (No)
GDSC
Linifanib
4.2428
SIDM01007
ALL|lymphoblastic_leukemia
p.S188P (No)
GDSC
Sunitinib
2.0565
SIDM01007
ALL|lymphoblastic_leukemia
p.S188P (No)
GDSC
GW-2580
122.3043
SIDM01007
ALL|lymphoblastic_leukemia
p.S188P (No)
GDSC
Pazopanib
9.0608
SIDM01007
ALL|lymphoblastic_leukemia
p.S188P (No)
GDSC
Linifanib
4.2428
SIDM00451
ALL|lymphoblastic_T_cell_leukaemia
p.V138I (No)
GDSC
Sunitinib
2.8236
SIDM00451
ALL|lymphoblastic_T_cell_leukaemia
p.V138I (No)
GDSC
GW-2580
192.1361
SIDM00451
ALL|lymphoblastic_T_cell_leukaemia
p.V138I (No)
GDSC
Pazopanib
27.7744
SIDM00451
ALL|lymphoblastic_T_cell_leukaemia
p.V138I (No)
GDSC
Linifanib
9.659
SIDM00989
BLCA|bladder
p.S937_S938insGS (No)
GDSC
GW-2580
131.6997
SIDM00989
BLCA|bladder
p.S937_S938insGS (No)
GDSC
Pazopanib
27.8581
SIDM00989
BLCA|bladder
p.S937_S938insGS (No)
GDSC
Linifanib
9.0538
SIDM00940
BRCA|breast
p.R106Q (No)
GDSC
GW-2580
440.0921
SIDM00940
BRCA|breast
p.R106Q (No)
GDSC
Pazopanib
20.2904
SIDM00940
BRCA|breast
p.R106Q (No)
GDSC
Linifanib
21.8688
SIDM00630
BRCA|breast
p.Q970* (No)
GDSC
GW-2580
150.6293
SIDM00630
BRCA|breast
p.Q970* (No)
GDSC
Pazopanib
12.1881
SIDM00630
BRCA|breast
p.Q970* (No)
GDSC
Linifanib
29.1021
SIDM00673
BRCA|breast
p.P510A (No)
GDSC
GW-2580
288.5063
SIDM00673
BRCA|breast
p.P510A (No)
GDSC
Pazopanib
19.2114
SIDM00673
BRCA|breast
p.P510A (No)
GDSC
Linifanib
11.3311
SIDM00781
COREAD|large_intestine
p.P402fs*3 (No)
GDSC
Sunitinib
64.3744
Showing 1 to 25 of 157 entries
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All proteins holding degron of PVSTS
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8NFM4
Adenylate cyclase type 4
DEG_SPOP_SBC_1
500:504
PVSTS
SPOP
0.7358
More...
Q68CP9
AT-rich interactive domain-containing protein 2
DEG_SPOP_SBC_1
616:620
PVSTS
SPOP
0.991
More...
O60641
Clathrin coat assembly protein AP180
DEG_SPOP_SBC_1
339:343
PVSTS
SPOP
0.933
More...
Q6XZF7
Dynamin-binding protein
DEG_SPOP_SBC_1
618:622
PVSTS
SPOP
0.911
More...
Q8N3J3
Homologous recombination OB-fold protein
DEG_SPOP_SBC_1
103:107
PVSTS
SPOP
0.857
More...
P07333
Macrophage colony-stimulating factor 1 receptor
DEG_SPOP_SBC_1
728:732
PVSTS
SPOP
0.9843
More...
Q13492
Phosphatidylinositol-binding clathrin assembly protein
DEG_SPOP_SBC_1
360:364
PVSTS
SPOP
0.9979
More...
A1L390
Pleckstrin homology domain-containing family G member 3
DEG_SPOP_SBC_1
2:6
PVSTS
SPOP
0.7869
More...
O14974
Protein phosphatase 1 regulatory subunit 12A
DEG_SPOP_SBC_1
771:775
PVSTS
SPOP
0.9914
More...
Q5VWN6
Protein TASOR 2
DEG_SPOP_SBC_1
1095:1099
PVSTS
SPOP
0.9912
More...
Q2M3A8
Putative uncharacterized protein MRGPRG-AS1
DEG_SPOP_SBC_1
84:88
PVSTS
SPOP
0.9694
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Q96JG6
Syndetin
DEG_SPOP_SBC_1
503:507
PVSTS
SPOP
0.9603
More...
P22105
Tenascin-X
DEG_SPOP_SBC_1
4012:4016
PVSTS
SPOP
0.5207
More...
O14836
Tumor necrosis factor receptor superfamily member 13B
DEG_SPOP_SBC_1
219:223
PVSTS
SPOP
0.8996
More...
Q06187
Tyrosine-protein kinase BTK
DEG_SPOP_SBC_1
210:214
PVSTS
SPOP
0.968
More...
P07947
Tyrosine-protein kinase Yes
DEG_SPOP_SBC_1
24:28
PVSTS
SPOP
0.9939
More...
A6NCI8
Uncharacterized protein C2orf78
DEG_SPOP_SBC_1
261:265
PVSTS
SPOP
0.9843
More...
Q8N8K9
Uncharacterized protein KIAA1958
DEG_SPOP_SBC_1
311:315
PVSTS
SPOP
0.9956
More...
Q15911
Zinc finger homeobox protein 3
DEG_SPOP_SBC_1
1654:1658
PVSTS
SPOP
0.91
More...
Q8IZM8
Zinc finger protein 654
DEG_SPOP_SBC_1
911:915
PVSTS
SPOP
0.8934
More...
Showing 1 to 20 of 20 entries
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