DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VLTST
Uniprot ID:
Q9H4G0
Source protein:
Band 4.1-like protein 1
Source gene:
EPB41L1
Class:
DEG_SPOP_SBC_1
Location:
791:795
E3 ligase:
SPOP
DEGRON score:
0.6823
ASA_SCORE:
66.58
COIL:
0.5296
CONS_SCORE:
0.581
DSS_SCORE:
0.3087
HELIX:
0.049
FCONS_SCORE:
0.9424
RIG_SCORE:
0.8104
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T799N
TCGA-AB-2808
LAML
TCGA
VLTST
DEG_SPOP_SBC_1
0.6667
p.G797S
TCGA-AZ-4615
COAD
TCGA
VLTST
DEG_SPOP_SBC_1
0.2778
p.G797S
TCGA-BF-AAP2
SKCM
TCGA
VLTST
DEG_SPOP_SBC_1
0.2778
p.S782F
TCGA-BS-A0UV
UCEC
TCGA
VLTST
DEG_SPOP_SBC_1
0.5278
p.S782F
DO42793
UCEC
ICGC
VLTST
DEG_SPOP_SBC_1
0.5278
p.R781S
TCGA-EE-A29Q
SKCM
TCGA
VLTST
DEG_SPOP_SBC_1
0.0556
p.G796S
DO7977
COAD
ICGC
VLTST
DEG_SPOP_SBC_1
0.75
p.G796S
DO219466
SKCM
ICGC
VLTST
DEG_SPOP_SBC_1
0.75
p.T798N
DO21487
LAML
ICGC
VLTST
DEG_SPOP_SBC_1
0.25
p.G788R
SIDM00070
B-Cell Non-Hodgkin's Lymphoma
GDSC
VLTST
DEG_SPOP_SBC_1
0.25
p.G788R
ACH-002393
Lymphoma
CCLE
VLTST
DEG_SPOP_SBC_1
0.25
p.G788R
CRO-AP3
NS
COSMIC
VLTST
DEG_SPOP_SBC_1
0.25
p.R781H
ACH-001664
Gastric Cancer
CCLE
VLTST
DEG_SPOP_SBC_1
0.0556
p.G787R
CRO-AP3
NS
COSMIC
VLTST
DEG_SPOP_SBC_1
0.2222
Drug responses associated with EPB41L1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLTST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P54132
Bloom syndrome protein
DEG_SPOP_SBC_1
524:528
VLTST
SPOP
0.9878
More...
Q5T1R4
Transcription factor HIVEP3
DEG_SPOP_SBC_1
1471:1475
VLTST
SPOP
0.9481
More...
Q5T8D3
Acyl-CoA-binding domain-containing protein 5
DEG_SPOP_SBC_1
177:181
VLTST
SPOP
0.998
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
7808:7812
VLTST
SPOP
0.7921
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
9265:9269
VLTST
SPOP
0.9834
More...
Q9H4G0
Band 4.1-like protein 1
DEG_SPOP_SBC_1
791:795
VLTST
SPOP
0.6823
More...
Q9H8V3
Protein ECT2
DEG_SPOP_SBC_1
6:10
VLTST
SPOP
0.9236
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3024:3028
VLTST
SPOP
0.9812
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3053:3057
VLTST
SPOP
0.9787
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
3195:3199
VLTST
SPOP
0.8767
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4310:4314
VLTST
SPOP
0.945
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4708:4712
VLTST
SPOP
0.9684
More...
Q9HC84
Mucin-5B
DEG_SPOP_SBC_1
4737:4741
VLTST
SPOP
0.9525
More...