DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VPTSS
Uniprot ID:
O75604
Source protein:
Ubiquitin carboxyl-terminal hydrolase 2
Source gene:
USP2
Class:
DEG_SPOP_SBC_1
Location:
54:58
E3 ligase:
SPOP
DEGRON score:
0.9881
ASA_SCORE:
74.64
COIL:
0.8506
CONS_SCORE:
0.387
DSS_SCORE:
0.4152
HELIX:
0.1418
FCONS_SCORE:
1.022
RIG_SCORE:
0.7337
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.Y66C
TCGA-BR-A4CS
STAD
TCGA
VPTSS
DEG_SPOP_SBC_1
0.1111
p.Y66C
DO47965
STAD
ICGC
VPTSS
DEG_SPOP_SBC_1
0.1111
p.R64S
TCGA-CC-A8HV
LIHC
TCGA
VPTSS
DEG_SPOP_SBC_1
0.1667
p.R64S
DO52189
LIHC
ICGC
VPTSS
DEG_SPOP_SBC_1
0.1667
p.T61A
TCGA-VQ-A8PX
STAD
TCGA
VPTSS
DEG_SPOP_SBC_1
0.25
p.T61A
DO51778
STAD
ICGC
VPTSS
DEG_SPOP_SBC_1
0.25
p.E45Q
DO22804
LICA
ICGC
VPTSS
DEG_SPOP_SBC_1
0.0833
p.R49K
DO219121
LUSC
ICGC
VPTSS
DEG_SPOP_SBC_1
0.1944
p.P53L
SIDM01112
Osteosarcoma
GDSC
VPTSS
DEG_SPOP_SBC_1
0.3056
p.P53L
SIDM00863
Burkitt's Lymphoma
GDSC
VPTSS
DEG_SPOP_SBC_1
0.3056
p.R62H
SIDM00651
Non-Small Cell Lung Carcinoma
GDSC
VPTSS
DEG_SPOP_SBC_1
0.2222
p.R62H
ACH-000980
Lung Cancer
CCLE
VPTSS
DEG_SPOP_SBC_1
0.2222
p.R62H
NCI-H1155
lung
COSMIC
VPTSS
DEG_SPOP_SBC_1
0.2222
p.G67R
SIDM00276
Biliary Tract Carcinoma
GDSC
VPTSS
DEG_SPOP_SBC_1
0.0833
p.G67R
ETK-1
biliary_tract
COSMIC
VPTSS
DEG_SPOP_SBC_1
0.0833
p.F59V
ACH-000993
Endometrial/Uterine Cancer
CCLE
VPTSS
DEG_SPOP_SBC_1
0.3056
Drug responses associated with USP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75038
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2
DEG_SPOP_SBC_1
1022:1026
VPTSS
SPOP
0.7337
More...
O75604
Ubiquitin carboxyl-terminal hydrolase 2
DEG_SPOP_SBC_1
54:58
VPTSS
SPOP
0.9881
More...
O94850
Dendrin
DEG_SPOP_SBC_1
251:255
VPTSS
SPOP
0.9712
More...
P22307
Sterol carrier protein 2
DEG_SPOP_SBC_1
422:426
VPTSS
SPOP
0.6008
More...
P31629
Transcription factor HIVEP2
DEG_SPOP_SBC_1
546:550
VPTSS
SPOP
0.9975
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2863:2867
VPTSS
SPOP
0.9646
More...
Q01973
Inactive tyrosine-protein kinase transmembrane receptor ROR1
DEG_SPOP_SBC_1
41:45
VPTSS
SPOP
0.8246
More...
Q02447
Transcription factor Sp3
DEG_SPOP_SBC_1
331:335
VPTSS
SPOP
0.9924
More...
Q8WWM7
Ataxin-2-like protein
DEG_SPOP_SBC_1
471:475
VPTSS
SPOP
0.9372
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12511:12515
VPTSS
SPOP
0.96
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12667:12671
VPTSS
SPOP
0.9914
More...
Q9Y3S1
Serine/threonine-protein kinase WNK2
DEG_SPOP_SBC_1
1602:1606
VPTSS
SPOP
0.9498
More...
P60413
Keratin-associated protein 10-12
DEG_SPOP_SBC_1
216:220
VPTSS
SPOP
0.7395
More...
Q9ULL0
Acrosomal protein KIAA1210
DEG_SPOP_SBC_1
927:931
VPTSS
SPOP
0.8818
More...