DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VPTSS
Uniprot ID:
Q8WWM7
Source protein:
Ataxin-2-like protein
Source gene:
ATXN2L
Class:
DEG_SPOP_SBC_1
Location:
471:475
E3 ligase:
SPOP
DEGRON score:
0.9372
ASA_SCORE:
86.52
COIL:
0.9356
CONS_SCORE:
0.2823
DSS_SCORE:
0.4915
HELIX:
0.046
FCONS_SCORE:
0.8608
RIG_SCORE:
0.6244
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P466S
TCGA-CR-7404
HNSC
TCGA
VPTSS
DEG_SPOP_SBC_1
0.1944
p.P466S
DO14420
HNSC
ICGC
VPTSS
DEG_SPOP_SBC_1
0.1944
p.G468S
TCGA-KK-A59V
PRAD
TCGA
VPTSS
DEG_SPOP_SBC_1
0.25
p.G468S
DO51346
PRAD
ICGC
VPTSS
DEG_SPOP_SBC_1
0.25
p.A470S
DO228948
LICA
ICGC
VPTSS
DEG_SPOP_SBC_1
0.3056
p.V484L
SIDM01007
T-Lymphoblastic Leukemia
GDSC
VPTSS
DEG_SPOP_SBC_1
0.0833
p.V484L
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
VPTSS
DEG_SPOP_SBC_1
0.0833
p.V471G
SK-NEP-1
kidney
COSMIC
VPTSS
DEG_SPOP_SBC_1
0.7532
p.V477G
SK-NEP-1
kidney
COSMIC
VPTSS
DEG_SPOP_SBC_1
0.2778
Drug responses associated with ATXN2L mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPTSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75038
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2
DEG_SPOP_SBC_1
1022:1026
VPTSS
SPOP
0.7337
More...
O75604
Ubiquitin carboxyl-terminal hydrolase 2
DEG_SPOP_SBC_1
54:58
VPTSS
SPOP
0.9881
More...
O94850
Dendrin
DEG_SPOP_SBC_1
251:255
VPTSS
SPOP
0.9712
More...
P22307
Sterol carrier protein 2
DEG_SPOP_SBC_1
422:426
VPTSS
SPOP
0.6008
More...
P31629
Transcription factor HIVEP2
DEG_SPOP_SBC_1
546:550
VPTSS
SPOP
0.9975
More...
P98088
Mucin-5AC
DEG_SPOP_SBC_1
2863:2867
VPTSS
SPOP
0.9646
More...
Q01973
Inactive tyrosine-protein kinase transmembrane receptor ROR1
DEG_SPOP_SBC_1
41:45
VPTSS
SPOP
0.8246
More...
Q02447
Transcription factor Sp3
DEG_SPOP_SBC_1
331:335
VPTSS
SPOP
0.9924
More...
Q8WWM7
Ataxin-2-like protein
DEG_SPOP_SBC_1
471:475
VPTSS
SPOP
0.9372
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12511:12515
VPTSS
SPOP
0.96
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12667:12671
VPTSS
SPOP
0.9914
More...
Q9Y3S1
Serine/threonine-protein kinase WNK2
DEG_SPOP_SBC_1
1602:1606
VPTSS
SPOP
0.9498
More...
P60413
Keratin-associated protein 10-12
DEG_SPOP_SBC_1
216:220
VPTSS
SPOP
0.7395
More...
Q9ULL0
Acrosomal protein KIAA1210
DEG_SPOP_SBC_1
927:931
VPTSS
SPOP
0.8818
More...