DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VSSTT
Uniprot ID:
Q8TC05
Source protein:
Nuclear protein MDM1
Source gene:
MDM1
Class:
DEG_SPOP_SBC_1
Location:
373:377
E3 ligase:
SPOP
DEGRON score:
0.9916
ASA_SCORE:
85.64
COIL:
0.9528
CONS_SCORE:
0.5924
DSS_SCORE:
0.344
HELIX:
0.0268
FCONS_SCORE:
1.1352
RIG_SCORE:
0.7311
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V383A
TCGA-AD-6964
COAD
TCGA
VSSTT
DEG_SPOP_SBC_1
0.1667
p.S372F
DO2401
BRCA
ICGC
VSSTT
DEG_SPOP_SBC_1
0.3056
p.S372F
DO48981
CESC
ICGC
VSSTT
DEG_SPOP_SBC_1
0.3056
p.K365N
DO40884
UCEC
ICGC
VSSTT
DEG_SPOP_SBC_1
0.1111
p.Q387H
DO42472
UCEC
ICGC
VSSTT
DEG_SPOP_SBC_1
0.0556
p.F374C
ACH-000608
Ovarian Cancer
CCLE
VSSTT
DEG_SPOP_SBC_1
0.7108
p.N385H
ACH-001991
Primary
CCLE
VSSTT
DEG_SPOP_SBC_1
0.1111
p.S363N
Caov-4
ovary
COSMIC
VSSTT
DEG_SPOP_SBC_1
0.0556
p.S363N
JAR
placenta
COSMIC
VSSTT
DEG_SPOP_SBC_1
0.0556
Drug responses associated with MDM1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSSTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14974
Protein phosphatase 1 regulatory subunit 12A
DEG_SPOP_SBC_1
656:660
VSSTT
SPOP
0.9967
More...
Q15398
Disks large-associated protein 5
DEG_SPOP_SBC_1
220:224
VSSTT
SPOP
0.781
More...
Q3SXY7
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3
DEG_SPOP_SBC_1
420:424
VSSTT
SPOP
0.9437
More...
Q8NHH9
Atlastin-2
DEG_SPOP_SBC_1
33:37
VSSTT
SPOP
0.999
More...
Q8TBY9
Cilia- and flagella-associated protein 251
DEG_SPOP_SBC_1
229:233
VSSTT
SPOP
0.9658
More...
Q8TC05
Nuclear protein MDM1
DEG_SPOP_SBC_1
373:377
VSSTT
SPOP
0.9916
More...
Q8TF66
Leucine-rich repeat-containing protein 15
DEG_SPOP_SBC_1
502:506
VSSTT
SPOP
0.584
More...
Q96HA1
Nuclear envelope pore membrane protein POM 121
DEG_SPOP_SBC_1
1165:1169
VSSTT
SPOP
0.9972
More...
Q96K83
Zinc finger protein 521
DEG_SPOP_SBC_1
354:358
VSSTT
SPOP
0.9025
More...
Q9H7N4
Splicing factor, arginine/serine-rich 19
DEG_SPOP_SBC_1
845:849
VSSTT
SPOP
0.9657
More...
A6NMB9
Fidgetin-like protein 2
DEG_SPOP_SBC_1
21:25
VSSTT
SPOP
0.9977
More...