DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VSSTT
Uniprot ID:
Q9H7N4
Source protein:
Splicing factor, arginine/serine-rich 19
Source gene:
SCAF1
Class:
DEG_SPOP_SBC_1
Location:
845:849
E3 ligase:
SPOP
DEGRON score:
0.9657
ASA_SCORE:
85.1
COIL:
0.9162
CONS_SCORE:
0.5136
DSS_SCORE:
0.3937
HELIX:
0.04
FCONS_SCORE:
0.9407
RIG_SCORE:
0.7033
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S856T
TCGA-CK-4951
COAD
TCGA
VSSTT
DEG_SPOP_SBC_1
0.5833
p.S856T
DO10582
COAD
ICGC
VSSTT
DEG_SPOP_SBC_1
0.5833
p.T848S
TCGA-RD-A8NB
STAD
TCGA
VSSTT
DEG_SPOP_SBC_1
0.6005
p.T848S
DO228246
BRCA
ICGC
VSSTT
DEG_SPOP_SBC_1
0.6005
p.T848S
DO50142
STAD
ICGC
VSSTT
DEG_SPOP_SBC_1
0.6005
p.V837M
DO50970
LICA
ICGC
VSSTT
DEG_SPOP_SBC_1
0.1111
p.T848A
DO230453
UTCA
ICGC
VSSTT
DEG_SPOP_SBC_1
0.7139
p.A838V
SIDM02041
Colorectal Carcinoma
GDSC
VSSTT
DEG_SPOP_SBC_1
0.1389
p.I841F
SIDM01157
Other Solid Cancers
GDSC
VSSTT
DEG_SPOP_SBC_1
0.2222
p.I841F
SIDM01598
Non-Small Cell Lung Carcinoma
GDSC
VSSTT
DEG_SPOP_SBC_1
0.2222
p.T849N
SIDM00497
Colorectal Carcinoma
GDSC
VSSTT
DEG_SPOP_SBC_1
0.8166
p.T849N
ACH-000683
Colon/Colorectal Cancer
CCLE
VSSTT
DEG_SPOP_SBC_1
0.8166
Drug responses associated with SCAF1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSSTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14974
Protein phosphatase 1 regulatory subunit 12A
DEG_SPOP_SBC_1
656:660
VSSTT
SPOP
0.9967
More...
Q15398
Disks large-associated protein 5
DEG_SPOP_SBC_1
220:224
VSSTT
SPOP
0.781
More...
Q3SXY7
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3
DEG_SPOP_SBC_1
420:424
VSSTT
SPOP
0.9437
More...
Q8NHH9
Atlastin-2
DEG_SPOP_SBC_1
33:37
VSSTT
SPOP
0.999
More...
Q8TBY9
Cilia- and flagella-associated protein 251
DEG_SPOP_SBC_1
229:233
VSSTT
SPOP
0.9658
More...
Q8TC05
Nuclear protein MDM1
DEG_SPOP_SBC_1
373:377
VSSTT
SPOP
0.9916
More...
Q8TF66
Leucine-rich repeat-containing protein 15
DEG_SPOP_SBC_1
502:506
VSSTT
SPOP
0.584
More...
Q96HA1
Nuclear envelope pore membrane protein POM 121
DEG_SPOP_SBC_1
1165:1169
VSSTT
SPOP
0.9972
More...
Q96K83
Zinc finger protein 521
DEG_SPOP_SBC_1
354:358
VSSTT
SPOP
0.9025
More...
Q9H7N4
Splicing factor, arginine/serine-rich 19
DEG_SPOP_SBC_1
845:849
VSSTT
SPOP
0.9657
More...
A6NMB9
Fidgetin-like protein 2
DEG_SPOP_SBC_1
21:25
VSSTT
SPOP
0.9977
More...