DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VSSTT
Uniprot ID:
Q8TF66
Source protein:
Leucine-rich repeat-containing protein 15
Source gene:
LRRC15
Class:
DEG_SPOP_SBC_1
Location:
502:506
E3 ligase:
SPOP
DEGRON score:
0.584
ASA_SCORE:
85.16
COIL:
0.8978
CONS_SCORE:
0.6081
DSS_SCORE:
0.5826
HELIX:
0.0352
FCONS_SCORE:
1.0827
RIG_SCORE:
0.6912
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S516N
TCGA-CQ-5333
HNSC
TCGA
VSSTT
DEG_SPOP_SBC_1
0.0556
p.S516N
DO14218
HNSC
ICGC
VSSTT
DEG_SPOP_SBC_1
0.0556
p.Y496C
TCGA-D1-A103
UCEC
TCGA
VSSTT
DEG_SPOP_SBC_1
0.1667
p.Y496C
DO42312
UCEC
ICGC
VSSTT
DEG_SPOP_SBC_1
0.1667
p.W495L
TCGA-D3-A1Q1
SKCM
TCGA
VSSTT
DEG_SPOP_SBC_1
0.1389
p.W495L
DO37445
SKCM
ICGC
VSSTT
DEG_SPOP_SBC_1
0.1389
p.P497L
TCGA-EE-A29D
SKCM
TCGA
VSSTT
DEG_SPOP_SBC_1
0.1944
p.P497L
DO38123
SKCM
ICGC
VSSTT
DEG_SPOP_SBC_1
0.1944
p.T515I
TCGA-FS-A1ZA
SKCM
TCGA
VSSTT
DEG_SPOP_SBC_1
0.0833
p.T515I
DO37551
SKCM
ICGC
VSSTT
DEG_SPOP_SBC_1
0.0833
p.S509C
DO225046
BRCA
ICGC
VSSTT
DEG_SPOP_SBC_1
0.25
p.S510Y
DO233876
GACA
ICGC
VSSTT
DEG_SPOP_SBC_1
0.2222
p.S516R
DO229034
LICA
ICGC
VSSTT
DEG_SPOP_SBC_1
0.0556
p.T511I
SIDM00435
Acute Myeloid Leukemia
GDSC
VSSTT
DEG_SPOP_SBC_1
0.1944
p.T511I
SIDM01034
B-Lymphoblastic Leukemia
GDSC
VSSTT
DEG_SPOP_SBC_1
0.1944
p.T511I
SIDM00589
Oral Cavity Carcinoma
GDSC
VSSTT
DEG_SPOP_SBC_1
0.1944
p.T511I
SIDM00596
Endometrial Carcinoma
GDSC
VSSTT
DEG_SPOP_SBC_1
0.1944
p.T511I
SIDM00279
Gastric Carcinoma
GDSC
VSSTT
DEG_SPOP_SBC_1
0.1944
p.T511I
SIDM00531
Pancreatic Carcinoma
GDSC
VSSTT
DEG_SPOP_SBC_1
0.1944
p.T511I
SIDM01498
Acute Myeloid Leukemia
GDSC
VSSTT
DEG_SPOP_SBC_1
0.1944
p.T511I
SIDM01774
Pancreatic Carcinoma
GDSC
VSSTT
DEG_SPOP_SBC_1
0.1944
p.D498G
SIDM01045
Endometrial Carcinoma
GDSC
VSSTT
DEG_SPOP_SBC_1
0.2222
p.D498G
EN
endometrium
COSMIC
VSSTT
DEG_SPOP_SBC_1
0.2222
p.D492G
ACH-000978
Endometrial/Uterine Cancer
CCLE
VSSTT
DEG_SPOP_SBC_1
0.0556
p.D492G
EN
endometrium
COSMIC
VSSTT
DEG_SPOP_SBC_1
0.0556
p.V512A
ACH-000990
Endometrial/Uterine Cancer
CCLE
VSSTT
DEG_SPOP_SBC_1
0.1667
Drug responses associated with LRRC15 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSSTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14974
Protein phosphatase 1 regulatory subunit 12A
DEG_SPOP_SBC_1
656:660
VSSTT
SPOP
0.9967
More...
Q15398
Disks large-associated protein 5
DEG_SPOP_SBC_1
220:224
VSSTT
SPOP
0.781
More...
Q3SXY7
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3
DEG_SPOP_SBC_1
420:424
VSSTT
SPOP
0.9437
More...
Q8NHH9
Atlastin-2
DEG_SPOP_SBC_1
33:37
VSSTT
SPOP
0.999
More...
Q8TBY9
Cilia- and flagella-associated protein 251
DEG_SPOP_SBC_1
229:233
VSSTT
SPOP
0.9658
More...
Q8TC05
Nuclear protein MDM1
DEG_SPOP_SBC_1
373:377
VSSTT
SPOP
0.9916
More...
Q8TF66
Leucine-rich repeat-containing protein 15
DEG_SPOP_SBC_1
502:506
VSSTT
SPOP
0.584
More...
Q96HA1
Nuclear envelope pore membrane protein POM 121
DEG_SPOP_SBC_1
1165:1169
VSSTT
SPOP
0.9972
More...
Q96K83
Zinc finger protein 521
DEG_SPOP_SBC_1
354:358
VSSTT
SPOP
0.9025
More...
Q9H7N4
Splicing factor, arginine/serine-rich 19
DEG_SPOP_SBC_1
845:849
VSSTT
SPOP
0.9657
More...
A6NMB9
Fidgetin-like protein 2
DEG_SPOP_SBC_1
21:25
VSSTT
SPOP
0.9977
More...