DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VVSTS
Uniprot ID:
A4UGR9
Source protein:
Xin actin-binding repeat-containing protein 2
Source gene:
XIRP2
Class:
DEG_SPOP_SBC_1
Location:
231:235
E3 ligase:
SPOP
DEGRON score:
0.8956
ASA_SCORE:
79.96
COIL:
0.7546
CONS_SCORE:
0.3998
DSS_SCORE:
0.4222
HELIX:
0.0572
FCONS_SCORE:
1.0234
RIG_SCORE:
0.6735
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M242I
TCGA-14-0866
GBM
TCGA
VVSTS
DEG_SPOP_SBC_1
0.1389
p.M242I
DO11878
GBM
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1389
p.M242I
DO229177
LMS
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1389
p.S239Y
TCGA-85-6561
LUSC
TCGA
VVSTS
DEG_SPOP_SBC_1
0.2222
p.S239Y
TCGA-GE-A2C6
THCA
TCGA
VVSTS
DEG_SPOP_SBC_1
0.2222
p.S239Y
DO26518
LUSC
ICGC
VVSTS
DEG_SPOP_SBC_1
0.2222
p.S239Y
DO40334
THCA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.2222
p.A224V
TCGA-AP-A1DV
UCEC
TCGA
VVSTS
DEG_SPOP_SBC_1
0.1389
p.A224V
DO32908
PACA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1389
p.A224V
DO43186
UCEC
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1389
p.F238I
TCGA-CN-4731
HNSC
TCGA
VVSTS
DEG_SPOP_SBC_1
0.25
p.F238I
DO15886
HNSC
ICGC
VVSTS
DEG_SPOP_SBC_1
0.25
p.E221K
TCGA-EY-A215
UCEC
TCGA
VVSTS
DEG_SPOP_SBC_1
0.0556
p.E221K
DO42665
UCEC
ICGC
VVSTS
DEG_SPOP_SBC_1
0.0556
p.S231F
TCGA-FI-A2D0
UCEC
TCGA
VVSTS
DEG_SPOP_SBC_1
0.7982
p.S231F
DO43891
UCEC
ICGC
VVSTS
DEG_SPOP_SBC_1
0.7982
p.R222Q
TCGA-KK-A59V
PRAD
TCGA
VVSTS
DEG_SPOP_SBC_1
0.0833
p.R222Q
DO234242
ESAD
ICGC
VVSTS
DEG_SPOP_SBC_1
0.0833
p.R222Q
DO51346
PRAD
ICGC
VVSTS
DEG_SPOP_SBC_1
0.0833
p.S239C
TCGA-XF-AAMG
BLCA
TCGA
VVSTS
DEG_SPOP_SBC_1
0.2222
p.S239C
DO219049
BLCA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.2222
p.C235F
DO228936
LICA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.7108
p.R222L
DO228978
LICA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.0833
p.R225M
DO229035
LICA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1667
p.R225M
DO224610
LUSC
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1667
p.R236C
DO231690
LINC
ICGC
VVSTS
DEG_SPOP_SBC_1
0.3056
p.R236C
DO227677
SKCA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.3056
p.E245K
DO45119
LIRI
ICGC
VVSTS
DEG_SPOP_SBC_1
0.0556
p.A224E
DO228343
MALY
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1389
p.S231A
DO232761
PBCA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.7588
p.A228T
SIDM01092
B-Cell Non-Hodgkin's Lymphoma
GDSC
VVSTS
DEG_SPOP_SBC_1
0.25
p.A228T
RF-48
stomach
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.25
p.G233S
SIDM00114
Non-Small Cell Lung Carcinoma
GDSC
VVSTS
DEG_SPOP_SBC_1
0.6993
p.G233S
H513
pleura
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.6993
p.R236H
SIDM01480
Ovarian Carcinoma
GDSC
VVSTS
DEG_SPOP_SBC_1
0.3056
p.P239L
NCI-H1105
lung
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.2222
p.G245D
COLO-792
skin
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.0556
p.G245D
NCI-H446
lung
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.0556
p.D236V
NB13
autonomic_ganglia
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.3056
p.Y227H
UACC-62
skin
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.3333
p.F232V
HCC2998
large_intestine
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.7068
p.P234T
T-24
urinary_tract
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.7031
p.P230S
HCC2998
large_intestine
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.3056
p.P234Q
NCI-H2009
lung
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.7035
p.L235P
SNU-81
large_intestine
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.7582
Drug responses associated with XIRP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A4UGR9
Xin actin-binding repeat-containing protein 2
DEG_SPOP_SBC_1
231:235
VVSTS
SPOP
0.8956
More...
O95235
Kinesin-like protein KIF20A
DEG_SPOP_SBC_1
45:49
VVSTS
SPOP
0.9985
More...
O95600
Krueppel-like factor 8
DEG_SPOP_SBC_1
121:125
VVSTS
SPOP
0.8645
More...
P23469
Receptor-type tyrosine-protein phosphatase epsilon
DEG_SPOP_SBC_1
78:82
VVSTS
SPOP
0.6754
More...
P51795
H
DEG_SPOP_SBC_1
724:728
VVSTS
SPOP
0.9829
More...
Q13422
DNA-binding protein Ikaros
DEG_SPOP_SBC_1
451:455
VVSTS
SPOP
0.7186
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
1171:1175
VVSTS
SPOP
0.7463
More...
Q9H7D0
Dedicator of cytokinesis protein 5
DEG_SPOP_SBC_1
1679:1683
VVSTS
SPOP
0.9974
More...
O15016
Tripartite motif-containing protein 66
DEG_SPOP_SBC_1
816:820
VVSTS
SPOP
0.6338
More...
Q96BU1
S100P-binding protein
DEG_SPOP_SBC_1
270:274
VVSTS
SPOP
0.9689
More...