DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VVSTS
Uniprot ID:
P23469
Source protein:
Receptor-type tyrosine-protein phosphatase epsilon
Source gene:
PTPRE
Class:
DEG_SPOP_SBC_1
Location:
78:82
E3 ligase:
SPOP
DEGRON score:
0.6754
ASA_SCORE:
85.06
COIL:
0.8642
CONS_SCORE:
0.6667
DSS_SCORE:
0.2706
HELIX:
0.093
FCONS_SCORE:
0.9779
RIG_SCORE:
0.777
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R70S
TCGA-50-5930
LUAD
TCGA
VVSTS
DEG_SPOP_SBC_1
0.1111
p.R70S
DO25189
LUAD
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1111
p.R75M
TCGA-55-7907
LUAD
TCGA
VVSTS
DEG_SPOP_SBC_1
0.25
p.R75M
DO25396
LUAD
ICGC
VVSTS
DEG_SPOP_SBC_1
0.25
p.S80N
TCGA-CK-4951
COAD
TCGA
VVSTS
DEG_SPOP_SBC_1
0.818
p.S80N
DO10582
COAD
ICGC
VVSTS
DEG_SPOP_SBC_1
0.818
p.G89R
TCGA-EE-A2MR
SKCM
TCGA
VVSTS
DEG_SPOP_SBC_1
0.1389
p.G89R
DO228014
SKCA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1389
p.G89R
DO37819
SKCM
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1389
p.V78A
DO228664
LICA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.5825
p.S80I
DO229008
LICA
ICGC
VVSTS
DEG_SPOP_SBC_1
0.8453
p.Q74L
DO27843
MALY
ICGC
VVSTS
DEG_SPOP_SBC_1
0.2222
p.D83N
SIDM00534
Colorectal Carcinoma
GDSC
VVSTS
DEG_SPOP_SBC_1
0.3056
p.D83N
ACH-000986
Colon/Colorectal Cancer
CCLE
VVSTS
DEG_SPOP_SBC_1
0.3056
p.D83N
HT-115
large_intestine
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.3056
p.R69K
SW684
soft_tissue
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.0833
Drug responses associated with PTPRE mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A4UGR9
Xin actin-binding repeat-containing protein 2
DEG_SPOP_SBC_1
231:235
VVSTS
SPOP
0.8956
More...
O95235
Kinesin-like protein KIF20A
DEG_SPOP_SBC_1
45:49
VVSTS
SPOP
0.9985
More...
O95600
Krueppel-like factor 8
DEG_SPOP_SBC_1
121:125
VVSTS
SPOP
0.8645
More...
P23469
Receptor-type tyrosine-protein phosphatase epsilon
DEG_SPOP_SBC_1
78:82
VVSTS
SPOP
0.6754
More...
P51795
H
DEG_SPOP_SBC_1
724:728
VVSTS
SPOP
0.9829
More...
Q13422
DNA-binding protein Ikaros
DEG_SPOP_SBC_1
451:455
VVSTS
SPOP
0.7186
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
1171:1175
VVSTS
SPOP
0.7463
More...
Q9H7D0
Dedicator of cytokinesis protein 5
DEG_SPOP_SBC_1
1679:1683
VVSTS
SPOP
0.9974
More...
O15016
Tripartite motif-containing protein 66
DEG_SPOP_SBC_1
816:820
VVSTS
SPOP
0.6338
More...
Q96BU1
S100P-binding protein
DEG_SPOP_SBC_1
270:274
VVSTS
SPOP
0.9689
More...