DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VVSTS
Uniprot ID:
O95235
Source protein:
Kinesin-like protein KIF20A
Source gene:
KIF20A
Class:
DEG_SPOP_SBC_1
Location:
45:49
E3 ligase:
SPOP
DEGRON score:
0.9985
ASA_SCORE:
83.02
COIL:
0.8804
CONS_SCORE:
0.403
DSS_SCORE:
0.3501
HELIX:
0.0792
FCONS_SCORE:
1.0617
RIG_SCORE:
0.7688
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N38S
TCGA-E6-A2P9
UCEC
TCGA
VVSTS
DEG_SPOP_SBC_1
0.1389
p.N38S
TCGA-EO-A22X
UCEC
TCGA
VVSTS
DEG_SPOP_SBC_1
0.1389
p.N38S
DO43907
UCEC
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1389
p.N38S
DO43714
UCEC
ICGC
VVSTS
DEG_SPOP_SBC_1
0.1389
p.S47F
TCGA-W3-AA1V
SKCM
TCGA
VVSTS
DEG_SPOP_SBC_1
0.9093
p.S47F
DO51276
SKCM
ICGC
VVSTS
DEG_SPOP_SBC_1
0.9093
p.D42N
SIDM00660
Colorectal Carcinoma
GDSC
VVSTS
DEG_SPOP_SBC_1
0.25
p.D42N
ACH-000985
Colon/Colorectal Cancer
CCLE
VVSTS
DEG_SPOP_SBC_1
0.25
p.D42N
LS-411N
large_intestine
COSMIC
VVSTS
DEG_SPOP_SBC_1
0.25
p.E59K
ACH-002357
Non-Cancerous
CCLE
VVSTS
DEG_SPOP_SBC_1
0.0556
Drug responses associated with KIF20A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A4UGR9
Xin actin-binding repeat-containing protein 2
DEG_SPOP_SBC_1
231:235
VVSTS
SPOP
0.8956
More...
O95235
Kinesin-like protein KIF20A
DEG_SPOP_SBC_1
45:49
VVSTS
SPOP
0.9985
More...
O95600
Krueppel-like factor 8
DEG_SPOP_SBC_1
121:125
VVSTS
SPOP
0.8645
More...
P23469
Receptor-type tyrosine-protein phosphatase epsilon
DEG_SPOP_SBC_1
78:82
VVSTS
SPOP
0.6754
More...
P51795
H
DEG_SPOP_SBC_1
724:728
VVSTS
SPOP
0.9829
More...
Q13422
DNA-binding protein Ikaros
DEG_SPOP_SBC_1
451:455
VVSTS
SPOP
0.7186
More...
Q6P4R8
Nuclear factor related to kappa-B-binding protein
DEG_SPOP_SBC_1
1171:1175
VVSTS
SPOP
0.7463
More...
Q9H7D0
Dedicator of cytokinesis protein 5
DEG_SPOP_SBC_1
1679:1683
VVSTS
SPOP
0.9974
More...
O15016
Tripartite motif-containing protein 66
DEG_SPOP_SBC_1
816:820
VVSTS
SPOP
0.6338
More...
Q96BU1
S100P-binding protein
DEG_SPOP_SBC_1
270:274
VVSTS
SPOP
0.9689
More...