DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PDSST
Uniprot ID:
Q1X8D7
Source protein:
Leucine-rich repeat-containing protein 36
Source gene:
LRRC36
Class:
DEG_SPOP_SBC_1
Location:
386:390
E3 ligase:
SPOP
DEGRON score:
0.5318
ASA_SCORE:
86.34
COIL:
0.8638
CONS_SCORE:
0.4374
DSS_SCORE:
0.3297
HELIX:
0.1086
FCONS_SCORE:
1.0198
RIG_SCORE:
0.6675
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D378Y
TCGA-A5-A1OF
UCEC
TCGA
PDSST
DEG_SPOP_SBC_1
0.1111
p.S382F
TCGA-CA-6718
COAD
TCGA
PDSST
DEG_SPOP_SBC_1
0.2222
p.P386S
TCGA-NK-A7XE
LUSC
TCGA
PDSST
DEG_SPOP_SBC_1
0.6752
p.K381T
ACH-000432
Leukemia
CCLE
PDSST
DEG_SPOP_SBC_1
0.1944
p.K381T
ACH-000531
Non-Cancerous
CCLE
PDSST
DEG_SPOP_SBC_1
0.1944
p.K381T
BV-173
haematopoietic_and_lymphoid_tissue
COSMIC
PDSST
DEG_SPOP_SBC_1
0.1944
p.H387P
JHH-1
liver
COSMIC
PDSST
DEG_SPOP_SBC_1
0.7694
p.P395L
NCI-H661
lung
COSMIC
PDSST
DEG_SPOP_SBC_1
0.3056
Drug responses associated with LRRC36 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14994
Synapsin-3
DEG_SPOP_SBC_1
28:32
PDSST
SPOP
0.9249
More...
O95425
Supervillin
DEG_SPOP_SBC_1
808:812
PDSST
SPOP
0.9671
More...
P35568
Insulin receptor substrate 1
DEG_SPOP_SBC_1
601:605
PDSST
SPOP
0.6597
More...
Q00872
Myosin-binding protein C, slow-type
DEG_SPOP_SBC_1
579:583
PDSST
SPOP
0.7592
More...
Q2M3C7
A-kinase anchor protein SPHKAP
DEG_SPOP_SBC_1
821:825
PDSST
SPOP
0.9316
More...
Q6NSW7
Homeobox protein NANOGP8
DEG_SPOP_SBC_1
66:70
PDSST
SPOP
0.9702
More...
Q8WTP8
Apoptosis-enhancing nuclease
DEG_SPOP_SBC_1
290:294
PDSST
SPOP
0.9842
More...
Q96L73
Histone-lysine N-methyltransferase, H3 lysine-36 specific
DEG_SPOP_SBC_1
282:286
PDSST
SPOP
0.9334
More...
Q9H9S0
Homeobox protein NANOG
DEG_SPOP_SBC_1
66:70
PDSST
SPOP
0.9889
More...
Q9NYZ3
G2 and S phase-expressed protein 1
DEG_SPOP_SBC_1
462:466
PDSST
SPOP
0.9636
More...
Q1X8D7
Leucine-rich repeat-containing protein 36
DEG_SPOP_SBC_1
386:390
PDSST
SPOP
0.5318
More...