DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
PDSST
Uniprot ID:
Q9H9S0
Source protein:
Homeobox protein NANOG
Source gene:
NANOG
Class:
DEG_SPOP_SBC_1
Location:
66:70
E3 ligase:
SPOP
DEGRON score:
0.9889
ASA_SCORE:
88.56
COIL:
0.9274
CONS_SCORE:
0.9304
DSS_SCORE:
0.7497
HELIX:
0.063
FCONS_SCORE:
1.2748
RIG_SCORE:
0.5462
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M58I
TCGA-32-1991
GBM
TCGA
PDSST
DEG_SPOP_SBC_1
0.1111
p.M58I
DO12754
GBM
ICGC
PDSST
DEG_SPOP_SBC_1
0.1111
p.M58I
SIDM00150
Colorectal Carcinoma
GDSC
PDSST
DEG_SPOP_SBC_1
0.1111
p.M58I
ACH-000969
Colon/Colorectal Cancer
CCLE
PDSST
DEG_SPOP_SBC_1
0.1111
p.M58I
KM12
large_intestine
COSMIC
PDSST
DEG_SPOP_SBC_1
0.1111
p.S68Y
TCGA-BS-A0UJ
UCEC
TCGA
PDSST
DEG_SPOP_SBC_1
0.8231
p.S68Y
DO42745
UCEC
ICGC
PDSST
DEG_SPOP_SBC_1
0.8231
p.A80V
TCGA-FD-A43X
BLCA
TCGA
PDSST
DEG_SPOP_SBC_1
0.0556
p.A80V
DO44067
BLCA
ICGC
PDSST
DEG_SPOP_SBC_1
0.0556
p.T78I
TCGA-NI-A4U2
LIHC
TCGA
PDSST
DEG_SPOP_SBC_1
0.5556
p.T78I
DO48589
LIHC
ICGC
PDSST
DEG_SPOP_SBC_1
0.5556
p.T70P
DO231953
LICA
ICGC
PDSST
DEG_SPOP_SBC_1
0.8142
p.P66H
DO228955
LICA
ICGC
PDSST
DEG_SPOP_SBC_1
0.7694
p.P66H
SIDM00649
Non-Small Cell Lung Carcinoma
GDSC
PDSST
DEG_SPOP_SBC_1
0.7694
p.P66H
ACH-000510
Lung Cancer
CCLE
PDSST
DEG_SPOP_SBC_1
0.7694
p.P66H
NCI-H1299
lung
COSMIC
PDSST
DEG_SPOP_SBC_1
0.7694
p.A80S
DO229027
LICA
ICGC
PDSST
DEG_SPOP_SBC_1
0.0556
p.D59N
DO222653
MELA
ICGC
PDSST
DEG_SPOP_SBC_1
0.1389
p.D59N
DO229456
SKCA
ICGC
PDSST
DEG_SPOP_SBC_1
0.1389
p.P66T
SIDM01156
Small Cell Lung Carcinoma
GDSC
PDSST
DEG_SPOP_SBC_1
0.7031
p.P66T
ACH-000890
Lung Cancer
CCLE
PDSST
DEG_SPOP_SBC_1
0.7031
p.P66T
SW1271
lung
COSMIC
PDSST
DEG_SPOP_SBC_1
0.7031
p.M58V
SIDM00487
Colorectal Carcinoma
GDSC
PDSST
DEG_SPOP_SBC_1
0.1111
p.M58V
ACH-000963
Colon/Colorectal Cancer
CCLE
PDSST
DEG_SPOP_SBC_1
0.1111
p.M58V
CCK-81
large_intestine
COSMIC
PDSST
DEG_SPOP_SBC_1
0.1111
p.P66L
SIDM01587
Bladder Carcinoma
GDSC
PDSST
DEG_SPOP_SBC_1
0.7582
Drug responses associated with NANOG mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PDSST
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14994
Synapsin-3
DEG_SPOP_SBC_1
28:32
PDSST
SPOP
0.9249
More...
O95425
Supervillin
DEG_SPOP_SBC_1
808:812
PDSST
SPOP
0.9671
More...
P35568
Insulin receptor substrate 1
DEG_SPOP_SBC_1
601:605
PDSST
SPOP
0.6597
More...
Q00872
Myosin-binding protein C, slow-type
DEG_SPOP_SBC_1
579:583
PDSST
SPOP
0.7592
More...
Q2M3C7
A-kinase anchor protein SPHKAP
DEG_SPOP_SBC_1
821:825
PDSST
SPOP
0.9316
More...
Q6NSW7
Homeobox protein NANOGP8
DEG_SPOP_SBC_1
66:70
PDSST
SPOP
0.9702
More...
Q8WTP8
Apoptosis-enhancing nuclease
DEG_SPOP_SBC_1
290:294
PDSST
SPOP
0.9842
More...
Q96L73
Histone-lysine N-methyltransferase, H3 lysine-36 specific
DEG_SPOP_SBC_1
282:286
PDSST
SPOP
0.9334
More...
Q9H9S0
Homeobox protein NANOG
DEG_SPOP_SBC_1
66:70
PDSST
SPOP
0.9889
More...
Q9NYZ3
G2 and S phase-expressed protein 1
DEG_SPOP_SBC_1
462:466
PDSST
SPOP
0.9636
More...
Q1X8D7
Leucine-rich repeat-containing protein 36
DEG_SPOP_SBC_1
386:390
PDSST
SPOP
0.5318
More...