DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
PPSTT
Uniprot ID:
P40855
Source protein:
Peroxisomal biogenesis factor 19
Source gene:
PEX19
Class:
DEG_SPOP_SBC_1
Location:
38:42
E3 ligase:
SPOP
DEGRON score:
0.9672
ASA_SCORE:
96.32
COIL:
0.9512
CONS_SCORE:
0.364
DSS_SCORE:
0.8131
HELIX:
0.0242
FCONS_SCORE:
0.9629
RIG_SCORE:
0.5357
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A44T
TCGA-AL-3473
KIRP
TCGA
PPSTT
DEG_SPOP_SBC_1
0.2778
p.A44T
DO20905
KIRP
ICGC
PPSTT
DEG_SPOP_SBC_1
0.2778
p.P39S
TCGA-D3-A1Q9
SKCM
TCGA
PPSTT
DEG_SPOP_SBC_1
0.5641
p.P39S
DO37428
SKCM
ICGC
PPSTT
DEG_SPOP_SBC_1
0.5641
p.A37S
TCGA-DF-A2KS
UCEC
TCGA
PPSTT
DEG_SPOP_SBC_1
0.3056
p.A37S
DO223285
UCEC
ICGC
PPSTT
DEG_SPOP_SBC_1
0.3056
p.S40F
TCGA-K4-A3WS
BLCA
TCGA
PPSTT
DEG_SPOP_SBC_1
0.9093
p.S40F
DO480
BLCA
ICGC
PPSTT
DEG_SPOP_SBC_1
0.9093
p.T43K
DO229027
LICA
ICGC
PPSTT
DEG_SPOP_SBC_1
0.3056
p.T43K
DO229036
LICA
ICGC
PPSTT
DEG_SPOP_SBC_1
0.3056
p.S40Y
DO229036
LICA
ICGC
PPSTT
DEG_SPOP_SBC_1
0.8231
p.T42N
DO229035
LICA
ICGC
PPSTT
DEG_SPOP_SBC_1
0.8166
p.P50L
SIDM00081
Melanoma
GDSC
PPSTT
DEG_SPOP_SBC_1
0.1111
p.P50L
ACH-000615
Skin Cancer
CCLE
PPSTT
DEG_SPOP_SBC_1
0.1111
p.P50L
SK-MEL-28
skin
COSMIC
PPSTT
DEG_SPOP_SBC_1
0.1111
Drug responses associated with PEX19 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PPSTT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P40855
Peroxisomal biogenesis factor 19
DEG_SPOP_SBC_1
38:42
PPSTT
SPOP
0.9672
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
586:590
PPSTT
SPOP
0.827
More...
Q02505
Mucin-3A
DEG_SPOP_SBC_1
1338:1342
PPSTT
SPOP
0.6546
More...
Q12906
Interleukin enhancer-binding factor 3
DEG_SPOP_SBC_1
360:364
PPSTT
SPOP
0.9995
More...
Q68DE3
Basic helix-loop-helix domain-containing protein USF3
DEG_SPOP_SBC_1
557:561
PPSTT
SPOP
0.9894
More...
Q71RC2
La-related protein 4
DEG_SPOP_SBC_1
584:588
PPSTT
SPOP
0.9845
More...
Q7Z410
Transmembrane protease serine 9
DEG_SPOP_SBC_1
744:748
PPSTT
SPOP
0.9917
More...
Q99583
Max-binding protein MNT
DEG_SPOP_SBC_1
370:374
PPSTT
SPOP
0.9764
More...
Q99941
Cyclic AMP-dependent transcription factor ATF-6 beta
DEG_SPOP_SBC_1
262:266
PPSTT
SPOP
0.9683
More...
Q9BQD3
KxDL motif-containing protein 1
DEG_SPOP_SBC_1
117:121
PPSTT
SPOP
0.9044
More...
Q9UBS0
Ribosomal protein S6 kinase beta-2
DEG_SPOP_SBC_1
455:459
PPSTT
SPOP
0.8411
More...
Q9UKN1
Mucin-12
DEG_SPOP_SBC_1
4236:4240
PPSTT
SPOP
0.7626
More...
Q9ULU4
Protein kinase C-binding protein 1
DEG_SPOP_SBC_1
747:751
PPSTT
SPOP
0.7904
More...
A3KN83
Protein strawberry notch homolog 1
DEG_SPOP_SBC_1
82:86
PPSTT
SPOP
0.9886
More...
Q9ULI4
Kinesin-like protein KIF26A
DEG_SPOP_SBC_1
163:167
PPSTT
SPOP
0.9599
More...
Q2KHR3
Glutamine and serine-rich protein 1
DEG_SPOP_SBC_1
274:278
PPSTT
SPOP
0.994
More...
Q5EBL2
Zinc finger protein 628
DEG_SPOP_SBC_1
650:654
PPSTT
SPOP
0.7452
More...
Q96KJ4
Mesothelin-like protein
DEG_SPOP_SBC_1
608:612
PPSTT
SPOP
0.9833
More...