DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CPH
CGC
Degron:
VNSSS
Uniprot ID:
A6NGB9
Source protein:
WAS/WASL-interacting protein family member 3
Source gene:
WIPF3
Class:
DEG_SPOP_SBC_1
Location:
316:320
E3 ligase:
SPOP
DEGRON score:
0.946
ASA_SCORE:
79.66
COIL:
0.9306
CONS_SCORE:
0.287
DSS_SCORE:
0.7094
HELIX:
0.0466
FCONS_SCORE:
0.6243
RIG_SCORE:
0.4901
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P309H
TCGA-AA-3864
COAD
TCGA
VNSSS
DEG_SPOP_SBC_1
0.1389
p.P309H
DO8490
COAD
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1389
p.A310V
TCGA-F4-6703
COAD
TCGA
VNSSS
DEG_SPOP_SBC_1
0.1667
p.A310V
DO9908
COAD
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1667
p.A310V
DO50314
ESAD
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1667
p.A310V
SIDM01007
T-Lymphoblastic Leukemia
GDSC
VNSSS
DEG_SPOP_SBC_1
0.1667
p.A310V
ACH-002256
Leukemia
CCLE
VNSSS
DEG_SPOP_SBC_1
0.1667
p.A310V
KARPAS-45
haematopoietic_and_lymphoid_tissue
COSMIC
VNSSS
DEG_SPOP_SBC_1
0.1667
p.P309L
TCGA-FW-A3R5
SKCM
TCGA
VNSSS
DEG_SPOP_SBC_1
0.1389
p.P309L
DO37406
SKCM
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1389
p.E321G
DO230334
COCA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.3056
p.E321G
DO229005
COCA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.3056
p.A310T
DO233941
GACA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1667
p.P323L
DO222363
MELA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.25
p.S330F
DO222599
MELA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.0556
p.P328L
DO222662
MELA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1111
p.P328A
SIDM00131
Glioma
GDSC
VNSSS
DEG_SPOP_SBC_1
0.1111
p.P328A
SIDM00965
Small Cell Lung Carcinoma
GDSC
VNSSS
DEG_SPOP_SBC_1
0.1111
p.P328A
SIDM00133
Non-Small Cell Lung Carcinoma
GDSC
VNSSS
DEG_SPOP_SBC_1
0.1111
p.P312H
SIDM00220
Ovarian Carcinoma
GDSC
VNSSS
DEG_SPOP_SBC_1
0.2222
p.P312H
ACH-000962
Ovarian Cancer
CCLE
VNSSS
DEG_SPOP_SBC_1
0.2222
p.P312H
ACH-001145
Ovarian Cancer
CCLE
VNSSS
DEG_SPOP_SBC_1
0.2222
p.P312H
OC-314
ovary
COSMIC
VNSSS
DEG_SPOP_SBC_1
0.2222
Drug responses associated with WIPF3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14924
Regulator of G-protein signaling 12
DEG_SPOP_SBC_1
1127:1131
VNSSS
SPOP
0.8442
More...
P06241
Tyrosine-protein kinase Fyn
DEG_SPOP_SBC_1
67:71
VNSSS
SPOP
0.9672
More...
P21453
Sphingosine 1-phosphate receptor 1
DEG_SPOP_SBC_1
378:382
VNSSS
SPOP
0.977
More...
Q12889
Oviduct-specific glycoprotein
DEG_SPOP_SBC_1
401:405
VNSSS
SPOP
0.965
More...
Q58F21
Bromodomain testis-specific protein
DEG_SPOP_SBC_1
197:201
VNSSS
SPOP
0.9915
More...
Q5SQI0
Alpha-tubulin N-acetyltransferase 1
DEG_SPOP_SBC_1
342:346
VNSSS
SPOP
0.968
More...
Q5TB80
Centrosomal protein of 162 kDa
DEG_SPOP_SBC_1
454:458
VNSSS
SPOP
0.8991
More...
Q7L4E1
Mitoguardin 2
DEG_SPOP_SBC_1
144:148
VNSSS
SPOP
0.9606
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
5227:5231
VNSSS
SPOP
0.8577
More...
Q96KQ4
Apoptosis-stimulating of p53 protein 1
DEG_SPOP_SBC_1
574:578
VNSSS
SPOP
0.9912
More...
Q99598
Translin-associated protein X
DEG_SPOP_SBC_1
29:33
VNSSS
SPOP
0.9939
More...
A6NGB9
WAS/WASL-interacting protein family member 3
DEG_SPOP_SBC_1
316:320
VNSSS
SPOP
0.946
More...
P51522
Zinc finger protein 83
DEG_SPOP_SBC_1
47:51
VNSSS
SPOP
0.6424
More...
Q92545
Transmembrane protein 131
DEG_SPOP_SBC_1
1624:1628
VNSSS
SPOP
0.9986
More...
A6NKL6
Transmembrane protein 200C
DEG_SPOP_SBC_1
123:127
VNSSS
SPOP
0.7274
More...