DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VNSSS
Uniprot ID:
P06241
Source protein:
Tyrosine-protein kinase Fyn
Source gene:
FYN
Class:
DEG_SPOP_SBC_1
Location:
67:71
E3 ligase:
SPOP
DEGRON score:
0.9672
ASA_SCORE:
78.38
COIL:
0.9294
CONS_SCORE:
0.3953
DSS_SCORE:
0.3516
HELIX:
0.0472
FCONS_SCORE:
0.9852
RIG_SCORE:
0.6765
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G81R
TCGA-B5-A1MX
UCEC
TCGA
VNSSS
DEG_SPOP_SBC_1
0.0556
p.G81R
DO41999
UCEC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.0556
p.T73M
TCGA-DK-A6AW
BLCA
TCGA
VNSSS
DEG_SPOP_SBC_1
0.2778
p.T73M
TCGA-EO-A22X
UCEC
TCGA
VNSSS
DEG_SPOP_SBC_1
0.2778
p.T73M
TCGA-EO-A3AZ
UCEC
TCGA
VNSSS
DEG_SPOP_SBC_1
0.2778
p.T73M
DO48566
BLCA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.2778
p.T73M
DO50078
UCEC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.2778
p.T73M
DO43907
UCEC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.2778
p.S70L
TCGA-DK-A6AW
BLCA
TCGA
VNSSS
DEG_SPOP_SBC_1
0.7667
p.S70L
TCGA-E6-A1LX
UCEC
TCGA
VNSSS
DEG_SPOP_SBC_1
0.7667
p.S70L
TCGA-EO-A3B0
UCEC
TCGA
VNSSS
DEG_SPOP_SBC_1
0.7667
p.S70L
DO48566
BLCA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.7667
p.S70L
DO219773
UCEC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.7667
p.S70L
DO41020
UCEC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.7667
p.S70L
SIDM01179
Other Sarcomas
GDSC
VNSSS
DEG_SPOP_SBC_1
0.7667
p.S70L
ACH-001702
Sarcoma
CCLE
VNSSS
DEG_SPOP_SBC_1
0.7667
p.S70L
VA-ES-BJ
bone
COSMIC
VNSSS
DEG_SPOP_SBC_1
0.7667
p.S69Y
TCGA-EO-A3B0
UCEC
TCGA
VNSSS
DEG_SPOP_SBC_1
0.712
p.S69Y
DO219773
UCEC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.712
p.R77C
TCGA-QG-A5Z2
COAD
TCGA
VNSSS
DEG_SPOP_SBC_1
0.1667
p.R77C
DO44096
COAD
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1667
p.V63I
SIDM01013
B-Cell Non-Hodgkin's Lymphoma
GDSC
VNSSS
DEG_SPOP_SBC_1
0.2222
p.V63I
JVM-2
haematopoietic_and_lymphoid_tissue
COSMIC
VNSSS
DEG_SPOP_SBC_1
0.2222
p.R77H
ACH-001061
Colon/Colorectal Cancer
CCLE
VNSSS
DEG_SPOP_SBC_1
0.1667
Drug responses associated with FYN mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
SIDM00461
LAML|acute_myeloid_leukaemia
p.A246S (No)
GDSC
A-770041
10.3234
SIDM00461
LAML|acute_myeloid_leukaemia
p.I245V (No)
GDSC
A-770041
10.3234
SIDM00085
GBM|glioma
p.D19G (No)
GDSC
A-770041
3.125
SIDM00516
SKCM|melanoma
p.G410R (No)
GDSC
A-770041
13.9703
SIDM01197
COREAD|large_intestine
p.D99V (No)
GDSC
A-770041
153.3747
SIDM01117
SCLC|lung_small_cell_carcinoma
p.G183V (No)
GDSC
A-770041
37.5293
SIDM00845
UNCLASSIFIED|Burkitt_lymphoma
p.R266G (No)
GDSC
A-770041
0.9828
SIDM00845
UNCLASSIFIED|Burkitt_lymphoma
p.A246S (No)
GDSC
A-770041
0.9828
SIDM00845
UNCLASSIFIED|Burkitt_lymphoma
p.I245V (No)
GDSC
A-770041
0.9828
SIDM01013
CLL|lymphoid_neoplasm_other
p.V63I (Yes)
GDSC
A-770041
25.0351
SIDM01179
UNCLASSIFIED|soft_tissue_other
p.S70L (Yes)
GDSC
A-770041
10.1506
All proteins holding degron of VNSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14924
Regulator of G-protein signaling 12
DEG_SPOP_SBC_1
1127:1131
VNSSS
SPOP
0.8442
More...
P06241
Tyrosine-protein kinase Fyn
DEG_SPOP_SBC_1
67:71
VNSSS
SPOP
0.9672
More...
P21453
Sphingosine 1-phosphate receptor 1
DEG_SPOP_SBC_1
378:382
VNSSS
SPOP
0.977
More...
Q12889
Oviduct-specific glycoprotein
DEG_SPOP_SBC_1
401:405
VNSSS
SPOP
0.965
More...
Q58F21
Bromodomain testis-specific protein
DEG_SPOP_SBC_1
197:201
VNSSS
SPOP
0.9915
More...
Q5SQI0
Alpha-tubulin N-acetyltransferase 1
DEG_SPOP_SBC_1
342:346
VNSSS
SPOP
0.968
More...
Q5TB80
Centrosomal protein of 162 kDa
DEG_SPOP_SBC_1
454:458
VNSSS
SPOP
0.8991
More...
Q7L4E1
Mitoguardin 2
DEG_SPOP_SBC_1
144:148
VNSSS
SPOP
0.9606
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
5227:5231
VNSSS
SPOP
0.8577
More...
Q96KQ4
Apoptosis-stimulating of p53 protein 1
DEG_SPOP_SBC_1
574:578
VNSSS
SPOP
0.9912
More...
Q99598
Translin-associated protein X
DEG_SPOP_SBC_1
29:33
VNSSS
SPOP
0.9939
More...
A6NGB9
WAS/WASL-interacting protein family member 3
DEG_SPOP_SBC_1
316:320
VNSSS
SPOP
0.946
More...
P51522
Zinc finger protein 83
DEG_SPOP_SBC_1
47:51
VNSSS
SPOP
0.6424
More...
Q92545
Transmembrane protein 131
DEG_SPOP_SBC_1
1624:1628
VNSSS
SPOP
0.9986
More...
A6NKL6
Transmembrane protein 200C
DEG_SPOP_SBC_1
123:127
VNSSS
SPOP
0.7274
More...