DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VNSSS
Uniprot ID:
Q96KQ4
Source protein:
Apoptosis-stimulating of p53 protein 1
Source gene:
PPP1R13B
Class:
DEG_SPOP_SBC_1
Location:
574:578
E3 ligase:
SPOP
DEGRON score:
0.9912
ASA_SCORE:
71.36
COIL:
0.7956
CONS_SCORE:
0.4997
DSS_SCORE:
0.5566
HELIX:
0.1168
FCONS_SCORE:
1.0235
RIG_SCORE:
0.6747
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S566F
TCGA-98-8021
LUSC
TCGA
VNSSS
DEG_SPOP_SBC_1
0.5556
p.S566F
DO27468
LUSC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.5556
p.N575K
TCGA-AX-A2HD
UCEC
TCGA
VNSSS
DEG_SPOP_SBC_1
0.5806
p.N575K
DO42608
UCEC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.5806
p.N575S
DO231622
LINC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.5958
p.Q565H
SIDM00652
Small Cell Lung Carcinoma
GDSC
VNSSS
DEG_SPOP_SBC_1
0.0833
p.Q565H
ACH-000780
Lung Cancer
CCLE
VNSSS
DEG_SPOP_SBC_1
0.0833
p.Q565H
NCI-H1105
lung
COSMIC
VNSSS
DEG_SPOP_SBC_1
0.0833
p.P564S
SIDM01259
B-Lymphoblastic Leukemia
GDSC
VNSSS
DEG_SPOP_SBC_1
0.0556
p.P564S
ACH-001669
Leukemia
CCLE
VNSSS
DEG_SPOP_SBC_1
0.0556
p.P564S
ACH-002238
Leukemia
CCLE
VNSSS
DEG_SPOP_SBC_1
0.0556
p.P564S
GR-ST
haematopoietic_and_lymphoid_tissue
COSMIC
VNSSS
DEG_SPOP_SBC_1
0.0556
p.P567L
SIDM00853
Other Sarcomas
GDSC
VNSSS
DEG_SPOP_SBC_1
0.1389
p.P567L
ACH-000835
Sarcoma
CCLE
VNSSS
DEG_SPOP_SBC_1
0.1389
p.P567L
GCT
soft_tissue
COSMIC
VNSSS
DEG_SPOP_SBC_1
0.1389
Drug responses associated with PPP1R13B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14924
Regulator of G-protein signaling 12
DEG_SPOP_SBC_1
1127:1131
VNSSS
SPOP
0.8442
More...
P06241
Tyrosine-protein kinase Fyn
DEG_SPOP_SBC_1
67:71
VNSSS
SPOP
0.9672
More...
P21453
Sphingosine 1-phosphate receptor 1
DEG_SPOP_SBC_1
378:382
VNSSS
SPOP
0.977
More...
Q12889
Oviduct-specific glycoprotein
DEG_SPOP_SBC_1
401:405
VNSSS
SPOP
0.965
More...
Q58F21
Bromodomain testis-specific protein
DEG_SPOP_SBC_1
197:201
VNSSS
SPOP
0.9915
More...
Q5SQI0
Alpha-tubulin N-acetyltransferase 1
DEG_SPOP_SBC_1
342:346
VNSSS
SPOP
0.968
More...
Q5TB80
Centrosomal protein of 162 kDa
DEG_SPOP_SBC_1
454:458
VNSSS
SPOP
0.8991
More...
Q7L4E1
Mitoguardin 2
DEG_SPOP_SBC_1
144:148
VNSSS
SPOP
0.9606
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
5227:5231
VNSSS
SPOP
0.8577
More...
Q96KQ4
Apoptosis-stimulating of p53 protein 1
DEG_SPOP_SBC_1
574:578
VNSSS
SPOP
0.9912
More...
Q99598
Translin-associated protein X
DEG_SPOP_SBC_1
29:33
VNSSS
SPOP
0.9939
More...
A6NGB9
WAS/WASL-interacting protein family member 3
DEG_SPOP_SBC_1
316:320
VNSSS
SPOP
0.946
More...
P51522
Zinc finger protein 83
DEG_SPOP_SBC_1
47:51
VNSSS
SPOP
0.6424
More...
Q92545
Transmembrane protein 131
DEG_SPOP_SBC_1
1624:1628
VNSSS
SPOP
0.9986
More...
A6NKL6
Transmembrane protein 200C
DEG_SPOP_SBC_1
123:127
VNSSS
SPOP
0.7274
More...