DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VNSSS
Uniprot ID:
P21453
Source protein:
Sphingosine 1-phosphate receptor 1
Source gene:
S1PR1
Class:
DEG_SPOP_SBC_1
Location:
378:382
E3 ligase:
SPOP
DEGRON score:
0.977
ASA_SCORE:
118.7
COIL:
0.9886
CONS_SCORE:
0.6207
DSS_SCORE:
0.9534
HELIX:
0.0084
FCONS_SCORE:
1.1736
RIG_SCORE:
0.5929
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V378I
TCGA-AG-A00Y
READ
TCGA
VNSSS
DEG_SPOP_SBC_1
0.7076
p.V378I
DO222445
BTCA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.7076
p.V378I
DO36542
READ
ICGC
VNSSS
DEG_SPOP_SBC_1
0.7076
p.S382F
TCGA-DA-A3F8
SKCM
TCGA
VNSSS
DEG_SPOP_SBC_1
0.7982
p.S382F
TCGA-EB-A3Y7
SKCM
TCGA
VNSSS
DEG_SPOP_SBC_1
0.7982
p.S382F
DO37418
SKCM
ICGC
VNSSS
DEG_SPOP_SBC_1
0.7982
p.S382F
DO37499
SKCM
ICGC
VNSSS
DEG_SPOP_SBC_1
0.7982
p.E370A
TCGA-Z2-AA3S
SKCM
TCGA
VNSSS
DEG_SPOP_SBC_1
0.1111
p.E370A
DO51302
SKCM
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1111
p.S380P
DO218243
GACA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.6752
p.E370Q
DO23170
LINC
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1111
p.E370K
DO220911
MELA
ICGC
VNSSS
DEG_SPOP_SBC_1
0.1111
p.S380Y
SIDM00279
Gastric Carcinoma
GDSC
VNSSS
DEG_SPOP_SBC_1
0.712
p.S380Y
ACH-000225
Gastric Cancer
CCLE
VNSSS
DEG_SPOP_SBC_1
0.712
p.S380Y
ECC12
stomach
COSMIC
VNSSS
DEG_SPOP_SBC_1
0.712
Drug responses associated with S1PR1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14924
Regulator of G-protein signaling 12
DEG_SPOP_SBC_1
1127:1131
VNSSS
SPOP
0.8442
More...
P06241
Tyrosine-protein kinase Fyn
DEG_SPOP_SBC_1
67:71
VNSSS
SPOP
0.9672
More...
P21453
Sphingosine 1-phosphate receptor 1
DEG_SPOP_SBC_1
378:382
VNSSS
SPOP
0.977
More...
Q12889
Oviduct-specific glycoprotein
DEG_SPOP_SBC_1
401:405
VNSSS
SPOP
0.965
More...
Q58F21
Bromodomain testis-specific protein
DEG_SPOP_SBC_1
197:201
VNSSS
SPOP
0.9915
More...
Q5SQI0
Alpha-tubulin N-acetyltransferase 1
DEG_SPOP_SBC_1
342:346
VNSSS
SPOP
0.968
More...
Q5TB80
Centrosomal protein of 162 kDa
DEG_SPOP_SBC_1
454:458
VNSSS
SPOP
0.8991
More...
Q7L4E1
Mitoguardin 2
DEG_SPOP_SBC_1
144:148
VNSSS
SPOP
0.9606
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
5227:5231
VNSSS
SPOP
0.8577
More...
Q96KQ4
Apoptosis-stimulating of p53 protein 1
DEG_SPOP_SBC_1
574:578
VNSSS
SPOP
0.9912
More...
Q99598
Translin-associated protein X
DEG_SPOP_SBC_1
29:33
VNSSS
SPOP
0.9939
More...
A6NGB9
WAS/WASL-interacting protein family member 3
DEG_SPOP_SBC_1
316:320
VNSSS
SPOP
0.946
More...
P51522
Zinc finger protein 83
DEG_SPOP_SBC_1
47:51
VNSSS
SPOP
0.6424
More...
Q92545
Transmembrane protein 131
DEG_SPOP_SBC_1
1624:1628
VNSSS
SPOP
0.9986
More...
A6NKL6
Transmembrane protein 200C
DEG_SPOP_SBC_1
123:127
VNSSS
SPOP
0.7274
More...