DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VSTTS
Uniprot ID:
P13647
Source protein:
Keratin, type II cytoskeletal 5
Source gene:
KRT5
Class:
DEG_SPOP_SBC_1
Location:
578:582
E3 ligase:
SPOP
DEGRON score:
0.9568
ASA_SCORE:
88.44
COIL:
0.8916
CONS_SCORE:
0.3191
DSS_SCORE:
0.3826
HELIX:
0.02
FCONS_SCORE:
0.7965
RIG_SCORE:
0.7105
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G569W
TCGA-49-AARE
LUAD
TCGA
VSTTS
DEG_SPOP_SBC_1
0.0833
p.G569W
DO218922
LUAD
ICGC
VSTTS
DEG_SPOP_SBC_1
0.0833
p.G569W
DO41056
UCEC
ICGC
VSTTS
DEG_SPOP_SBC_1
0.0833
p.S582Y
TCGA-55-A490
LUAD
TCGA
VSTTS
DEG_SPOP_SBC_1
0.712
p.S582Y
DO24596
LUAD
ICGC
VSTTS
DEG_SPOP_SBC_1
0.712
p.S587N
TCGA-A5-A0G2
UCEC
TCGA
VSTTS
DEG_SPOP_SBC_1
0.6389
p.S587N
DO41235
UCEC
ICGC
VSTTS
DEG_SPOP_SBC_1
0.6389
p.G569E
TCGA-FW-A3R5
SKCM
TCGA
VSTTS
DEG_SPOP_SBC_1
0.0833
p.G569E
DO37406
SKCM
ICGC
VSTTS
DEG_SPOP_SBC_1
0.0833
p.V575I
DO233168
GACA
ICGC
VSTTS
DEG_SPOP_SBC_1
0.25
p.S583F
SIDM00545
Melanoma
GDSC
VSTTS
DEG_SPOP_SBC_1
0.3056
p.S583F
ACH-000987
Skin Cancer
CCLE
VSTTS
DEG_SPOP_SBC_1
0.3056
p.S583F
Mewo
skin
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.3056
p.K586R
SIDM00845
Burkitt's Lymphoma
GDSC
VSTTS
DEG_SPOP_SBC_1
0.3333
p.S579Y
SIDM00119
Non-Small Cell Lung Carcinoma
GDSC
VSTTS
DEG_SPOP_SBC_1
0.712
p.S579Y
EKVX
lung
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.712
p.G569R
SIDM00529
Breast Carcinoma
GDSC
VSTTS
DEG_SPOP_SBC_1
0.0833
p.V575F
ACH-001303
Neuroblastoma
CCLE
VSTTS
DEG_SPOP_SBC_1
0.25
Drug responses associated with KRT5 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95644
Nuclear factor of activated T-cells, cytoplasmic 1
DEG_SPOP_SBC_1
502:506
VSTTS
SPOP
0.7497
More...
O95678
Keratin, type II cytoskeletal 75
DEG_SPOP_SBC_1
539:543
VSTTS
SPOP
0.9912
More...
P13647
Keratin, type II cytoskeletal 5
DEG_SPOP_SBC_1
578:582
VSTTS
SPOP
0.9568
More...
P47736
Rap1 GTPase-activating protein 1
DEG_SPOP_SBC_1
617:621
VSTTS
SPOP
0.9852
More...
Q5SW79
Centrosomal protein of 170 kDa
DEG_SPOP_SBC_1
1128:1132
VSTTS
SPOP
0.9947
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
243:247
VSTTS
SPOP
0.9283
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12353:12357
VSTTS
SPOP
0.6523
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
13758:13762
VSTTS
SPOP
0.7914
More...
Q99963
Endophilin-A3
DEG_SPOP_SBC_1
270:274
VSTTS
SPOP
0.9977
More...
Q9HCM3
UPF0606 protein KIAA1549
DEG_SPOP_SBC_1
883:887
VSTTS
SPOP
0.9959
More...
E2RYF6
Mucin-22
DEG_SPOP_SBC_1
1378:1382
VSTTS
SPOP
0.9643
More...
O75157
TSC22 domain family protein 2
DEG_SPOP_SBC_1
521:525
VSTTS
SPOP
0.9064
More...