DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
VSTTS
Uniprot ID:
Q8WWK9
Source protein:
Cytoskeleton-associated protein 2
Source gene:
CKAP2
Class:
DEG_SPOP_SBC_1
Location:
243:247
E3 ligase:
SPOP
DEGRON score:
0.9283
ASA_SCORE:
90.04
COIL:
0.9332
CONS_SCORE:
0.3175
DSS_SCORE:
0.5712
HELIX:
0.037
FCONS_SCORE:
0.9848
RIG_SCORE:
0.7454
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F242S
TCGA-CG-5721
STAD
TCGA
VSTTS
DEG_SPOP_SBC_1
0.3056
p.T246A
TCGA-D1-A160
UCEC
TCGA
VSTTS
DEG_SPOP_SBC_1
0.7139
p.M236I
TCGA-GN-A26C
SKCM
TCGA
VSTTS
DEG_SPOP_SBC_1
0.1389
p.K252R
DO51223
BRCA
ICGC
VSTTS
DEG_SPOP_SBC_1
0.1944
p.S255Y
DO7801
COAD
ICGC
VSTTS
DEG_SPOP_SBC_1
0.1111
p.K245Q
DO10880
GBM
ICGC
VSTTS
DEG_SPOP_SBC_1
0.6944
p.R233L
DO228948
LICA
ICGC
VSTTS
DEG_SPOP_SBC_1
0.0556
p.G235W
DO46957
RECA
ICGC
VSTTS
DEG_SPOP_SBC_1
0.1111
p.S250N
DO219967
SARC
ICGC
VSTTS
DEG_SPOP_SBC_1
0.25
p.K252N
DO47769
STAD
ICGC
VSTTS
DEG_SPOP_SBC_1
0.1944
p.R233W
22RV1
prostate
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.0556
p.R233Q
SNG-M
endometrium
COSMIC
VSTTS
DEG_SPOP_SBC_1
0.0556
Drug responses associated with CKAP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O95644
Nuclear factor of activated T-cells, cytoplasmic 1
DEG_SPOP_SBC_1
502:506
VSTTS
SPOP
0.7497
More...
O95678
Keratin, type II cytoskeletal 75
DEG_SPOP_SBC_1
539:543
VSTTS
SPOP
0.9912
More...
P13647
Keratin, type II cytoskeletal 5
DEG_SPOP_SBC_1
578:582
VSTTS
SPOP
0.9568
More...
P47736
Rap1 GTPase-activating protein 1
DEG_SPOP_SBC_1
617:621
VSTTS
SPOP
0.9852
More...
Q5SW79
Centrosomal protein of 170 kDa
DEG_SPOP_SBC_1
1128:1132
VSTTS
SPOP
0.9947
More...
Q8WWK9
Cytoskeleton-associated protein 2
DEG_SPOP_SBC_1
243:247
VSTTS
SPOP
0.9283
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
12353:12357
VSTTS
SPOP
0.6523
More...
Q8WXI7
Mucin-16
DEG_SPOP_SBC_1
13758:13762
VSTTS
SPOP
0.7914
More...
Q99963
Endophilin-A3
DEG_SPOP_SBC_1
270:274
VSTTS
SPOP
0.9977
More...
Q9HCM3
UPF0606 protein KIAA1549
DEG_SPOP_SBC_1
883:887
VSTTS
SPOP
0.9959
More...
E2RYF6
Mucin-22
DEG_SPOP_SBC_1
1378:1382
VSTTS
SPOP
0.9643
More...
O75157
TSC22 domain family protein 2
DEG_SPOP_SBC_1
521:525
VSTTS
SPOP
0.9064
More...